Gene annotation
Transcriptome id Sobic.004G108400.1
Synonym Sb04g008870
Functional annotation heavy-metal-associated domain-containing protein, putative, expressed
UniProt C5XZ15
Pfam PF00403
Panther DB PTHR22814 PTHR22814:SF33
NCBI CDD KOG1603; Copper chaperone
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G06130 : Heavy metal transport/detoxification superfamily protein
RAP-DB (Rice) LOC_Os11g05010.3 : heavy-metal-associated domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034458 , Zm00025a053845 , Zm00025a019971
Brachypodium KQJ92326 , KQJ92327
Barley HORVU5Hr1G040920.1 , HORVU5Hr1G040920.2
Wheat TraesCS5D02G141600 , TraesCS4A02G184700 , TraesCS5B02G131600 , TraesCS5A02G133900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G108400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
2 Sobic.006G221300 expressed protein -
3 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
4 Sobic.001G452900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
5 Sobic.007G008300 WD domain, G-beta repeat domain containing protein, expressed K10751: chromatin assembly factor 1 subunit B
6 Sobic.009G127800 BZIP protein, putative, expressed -
7 Sobic.007G162400 ABC-2 type transporter domain containing protein, expressed -
8 Sobic.002G050700 tesmin/TSO1-like CXC domain containing protein, expressed -
9 Sobic.009G101100 patellin protein, putative, expressed -
10 Sobic.006G112800 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
11 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
12 Sobic.003G320300 ZOS1-12 - C2H2 zinc finger protein, expressed -
13 Sobic.009G077300 protein kinase, putative, expressed -
14 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
15 Sobic.006G142500 protein kinase, putative, expressed -
16 Sobic.005G157300 protein binding protein, putative, expressed -
17 Sobic.009G257900 expressed protein -
18 Sobic.004G234500 eukaryotic aspartyl protease domain containing protein, expressed -
19 Sobic.005G153000 agenet domain containing protein, expressed -
20 Sobic.010G086000 cyclin, putative, expressed K18810: cyclin D1/2/4, plant


Gene co-expression network
sample Sobic004G108400 Sobic004G108400 Sobic001G054700 Sobic001G054700 Sobic004G108400--Sobic001G054700 Sobic006G221300 Sobic006G221300 Sobic004G108400--Sobic006G221300 Sobic009G143200 Sobic009G143200 Sobic004G108400--Sobic009G143200 Sobic001G452900 Sobic001G452900 Sobic004G108400--Sobic001G452900 Sobic007G008300 Sobic007G008300 Sobic004G108400--Sobic007G008300 Sobic009G127800 Sobic009G127800 Sobic004G108400--Sobic009G127800 Sobic007G162400 Sobic007G162400 Sobic004G108400--Sobic007G162400 Sobic002G050700 Sobic002G050700 Sobic004G108400--Sobic002G050700 Sobic009G101100 Sobic009G101100 Sobic004G108400--Sobic009G101100 Sobic001G054700--Sobic006G221300 Sobic009G077300 Sobic009G077300 Sobic001G054700--Sobic009G077300 Sobic001G054700--Sobic004G108400 Sobic001G054700--Sobic009G143200 Sobic001G054700--Sobic002G050700 Sobic006G124400 Sobic006G124400 Sobic001G054700--Sobic006G124400 Sobic001G054700--Sobic009G127800 Sobic005G153000 Sobic005G153000 Sobic001G054700--Sobic005G153000 Sobic006G221800 Sobic006G221800 Sobic001G054700--Sobic006G221800 Sobic006G221300--Sobic009G127800 Sobic006G221300--Sobic001G054700 Sobic006G221300--Sobic009G077300 Sobic006G221300--Sobic005G153000 Sobic006G221300--Sobic009G143200 Sobic006G221300--Sobic004G108400 Sobic004G052200 Sobic004G052200 Sobic006G221300--Sobic004G052200 Sobic009G225500 Sobic009G225500 Sobic006G221300--Sobic009G225500 Sobic008G052300 Sobic008G052300 Sobic006G221300--Sobic008G052300 Sobic005G157300 Sobic005G157300 Sobic009G143200--Sobic005G157300 Sobic004G317000 Sobic004G317000 Sobic009G143200--Sobic004G317000 Sobic009G143200--Sobic001G054700 Sobic003G055600 Sobic003G055600 Sobic009G143200--Sobic003G055600 Sobic009G143200--Sobic006G221300 Sobic009G143200--Sobic009G077300 Sobic009G143200--Sobic004G108400 Sobic009G143200--Sobic004G052200 Sobic007G187700 Sobic007G187700 Sobic009G143200--Sobic007G187700 Sobic010G086000 Sobic010G086000 Sobic001G452900--Sobic010G086000 Sobic010G241100 Sobic010G241100 Sobic001G452900--Sobic010G241100 Sobic001G452900--Sobic004G108400 Sobic010G192500 Sobic010G192500 Sobic001G452900--Sobic010G192500 Sobic006G142500 Sobic006G142500 Sobic001G452900--Sobic006G142500 Sobic003G032200 Sobic003G032200 Sobic001G452900--Sobic003G032200 Sobic002G284100 Sobic002G284100 Sobic001G452900--Sobic002G284100 Sobic004G267600 Sobic004G267600 Sobic001G452900--Sobic004G267600 Sobic009G172950 Sobic009G172950 Sobic001G452900--Sobic009G172950 Sobic001G295400 Sobic001G295400 Sobic007G008300--Sobic001G295400 Sobic007G008300--Sobic009G172950 Sobic007G008300--Sobic004G108400 Sobic001G105800 Sobic001G105800 Sobic007G008300--Sobic001G105800 Sobic003G320300 Sobic003G320300 Sobic007G008300--Sobic003G320300 Sobic009G184200 Sobic009G184200 Sobic007G008300--Sobic009G184200 Sobic007G007800 Sobic007G007800 Sobic007G008300--Sobic007G007800 Sobic001G377700 Sobic001G377700 Sobic007G008300--Sobic001G377700 Sobic007G008300--Sobic003G055600 Sobic009G127800--Sobic006G221300 Sobic009G127800--Sobic009G225500 Sobic009G127800--Sobic001G054700 Sobic009G127800--Sobic006G142500 Sobic009G127800--Sobic008G052300 Sobic002G279400 Sobic002G279400 Sobic009G127800--Sobic002G279400 Sobic009G127800--Sobic007G162400 Sobic002G027600 Sobic002G027600 Sobic009G127800--Sobic002G027600 Sobic009G127800--Sobic005G157300 Sobic007G162400--Sobic006G221300 Sobic007G162400--Sobic009G127800 Sobic007G162400--Sobic001G054700 Sobic007G162400--Sobic004G108400 Sobic001G101700 Sobic001G101700 Sobic007G162400--Sobic001G101700 Sobic007G162400--Sobic002G027600 Sobic007G201900 Sobic007G201900 Sobic007G162400--Sobic007G201900 Sobic003G290400 Sobic003G290400 Sobic007G162400--Sobic003G290400 Sobic007G162400--Sobic009G143200 Sobic002G050700--Sobic006G221800 Sobic001G390400 Sobic001G390400 Sobic002G050700--Sobic001G390400 Sobic002G050700--Sobic001G054700 Sobic001G079900 Sobic001G079900 Sobic002G050700--Sobic001G079900 Sobic002G050700--Sobic009G077300 Sobic004G003700 Sobic004G003700 Sobic002G050700--Sobic004G003700 Sobic002G050700--Sobic001G101700 Sobic001G496400 Sobic001G496400 Sobic002G050700--Sobic001G496400 Sobic002G050700--Sobic006G221300 Sobic002G296000 Sobic002G296000 Sobic009G101100--Sobic002G296000 Sobic009G101100--Sobic006G124400 Sobic007G027900 Sobic007G027900 Sobic009G101100--Sobic007G027900 Sobic009G101100--Sobic003G032200 Sobic009G101100--Sobic006G221300 Sobic001G304800 Sobic001G304800 Sobic009G101100--Sobic001G304800 Sobic008G083500 Sobic008G083500 Sobic009G101100--Sobic008G083500 Sobic006G105600 Sobic006G105600 Sobic009G101100--Sobic006G105600 Sobic010G105400 Sobic010G105400 Sobic009G101100--Sobic010G105400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.