Gene annotation
Transcriptome id Sobic.002G050700.3,Sobic.002G050700.2
Synonym TCX2, ATTCX2, Sb02g004250
Functional annotation tesmin/TSO1-like CXC domain containing protein, expressed
UniProt A0A1W0W2A9 , A0A1W0W2E2
Pfam PF03638
Panther DB PTHR12446 PTHR12446:SF21
NCBI CDD KOG1171; Metallothionein-like protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14770 : TESMIN/TSO1-like CXC 2
RAP-DB (Rice) LOC_Os07g07974.1 : tesmin/TSO1-like CXC domain containing protein, expressed
MaizeGDB (Corn) Zm00025a045148
Brachypodium PNT76924 , KQK20630
Barley HORVU4Hr1G004280.5 , HORVU4Hr1G004280.6 , HORVU4Hr1G004280.7 , HORVU4Hr1G004280.2 , HORVU4Hr1G004280.3 , HORVU4Hr1G004280.8 , HORVU4Hr1G004280.9 , HORVU4Hr1G004280.16 , HORVU4Hr1G004280.17 , HORVU4Hr1G004280.14 , HORVU4Hr1G004280.15 , HORVU4Hr1G004280.12 , HORVU4Hr1G004280.13 , HORVU4Hr1G004280.10 , HORVU4Hr1G004280.11 , HORVU4Hr1G004280.18 , HORVU4Hr1G004280.19
Wheat TraesCS4A02G284600 , TraesCS4A02G284600 , TraesCS4A02G284600 , TraesCS4D02G026100 , TraesCS4B02G028500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
2 Sobic.001G390400 expressed protein -
3 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
4 Sobic.001G079900 expressed protein -
5 Sobic.009G077300 protein kinase, putative, expressed -
6 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -
7 Sobic.001G101700 OsGIF1(Ortholog in rice:He et al. (2017))(PubMedID : 31659832)@GRF-interacting factor 1, putative, expressed -
8 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
9 Sobic.006G221300 expressed protein -
10 Sobic.005G163400 dnaJ domain containing protein, expressed -
11 Sobic.002G319300 IQ calmodulin-binding motif family protein, expressed K16743: ASPM, abnormal spindle-like microcephaly-associated protein
12 Sobic.007G209200 CUP-SHAPED COTYLEDON3, putative, expressed -
13 Sobic.008G151600 PMR5, putative, expressed -
14 Sobic.010G026100 expressed protein -
15 Sobic.004G108400 heavy-metal-associated domain-containing protein, putative, expressed -
16 Sobic.001G493900 beta-galactosidase, putative, expressed -
17 Sobic.010G024500 expressed protein -
18 Sobic.007G121600 - -
19 Sobic.006G274200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Eukaryotic aspartyl protease domain containing protein, expressed -
20 Sobic.006G171050 - -


Gene co-expression network
sample Sobic002G050700 Sobic002G050700 Sobic006G221800 Sobic006G221800 Sobic002G050700--Sobic006G221800 Sobic001G390400 Sobic001G390400 Sobic002G050700--Sobic001G390400 Sobic001G054700 Sobic001G054700 Sobic002G050700--Sobic001G054700 Sobic001G079900 Sobic001G079900 Sobic002G050700--Sobic001G079900 Sobic009G077300 Sobic009G077300 Sobic002G050700--Sobic009G077300 Sobic004G003700 Sobic004G003700 Sobic002G050700--Sobic004G003700 Sobic001G101700 Sobic001G101700 Sobic002G050700--Sobic001G101700 Sobic001G496400 Sobic001G496400 Sobic002G050700--Sobic001G496400 Sobic006G221300 Sobic006G221300 Sobic002G050700--Sobic006G221300 Sobic006G221800--Sobic001G496400 Sobic006G221800--Sobic001G101700 Sobic008G114900 Sobic008G114900 Sobic006G221800--Sobic008G114900 Sobic006G221800--Sobic004G003700 Sobic006G221800--Sobic002G050700 Sobic008G151600 Sobic008G151600 Sobic006G221800--Sobic008G151600 Sobic002G319300 Sobic002G319300 Sobic006G221800--Sobic002G319300 Sobic009G087700 Sobic009G087700 Sobic006G221800--Sobic009G087700 Sobic001G493900 Sobic001G493900 Sobic006G221800--Sobic001G493900 Sobic003G366000 Sobic003G366000 Sobic001G390400--Sobic003G366000 Sobic005G163400 Sobic005G163400 Sobic001G390400--Sobic005G163400 Sobic006G050900 Sobic006G050900 Sobic001G390400--Sobic006G050900 Sobic001G390400--Sobic002G050700 Sobic010G192500 Sobic010G192500 Sobic001G390400--Sobic010G192500 Sobic004G317200 Sobic004G317200 Sobic001G390400--Sobic004G317200 Sobic001G390400--Sobic002G319300 Sobic010G024500 Sobic010G024500 Sobic001G390400--Sobic010G024500 Sobic006G142500 Sobic006G142500 Sobic001G390400--Sobic006G142500 Sobic001G054700--Sobic006G221300 Sobic001G054700--Sobic009G077300 Sobic004G108400 Sobic004G108400 Sobic001G054700--Sobic004G108400 Sobic009G143200 Sobic009G143200 Sobic001G054700--Sobic009G143200 Sobic001G054700--Sobic002G050700 Sobic006G124400 Sobic006G124400 Sobic001G054700--Sobic006G124400 Sobic009G127800 Sobic009G127800 Sobic001G054700--Sobic009G127800 Sobic005G153000 Sobic005G153000 Sobic001G054700--Sobic005G153000 Sobic001G054700--Sobic006G221800 Sobic005G032600 Sobic005G032600 Sobic001G079900--Sobic005G032600 Sobic001G384700 Sobic001G384700 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic001G079900--Sobic002G050700 Sobic003G351900 Sobic003G351900 Sobic001G079900--Sobic003G351900 Sobic001G079900--Sobic001G493900 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic009G141700 Sobic009G141700 Sobic001G079900--Sobic009G141700 Sobic009G077300--Sobic005G153000 Sobic009G077300--Sobic006G221300 Sobic009G077300--Sobic001G054700 Sobic009G077300--Sobic005G163400 Sobic002G168000 Sobic002G168000 Sobic009G077300--Sobic002G168000 Sobic009G077300--Sobic002G050700 Sobic004G282601 Sobic004G282601 Sobic009G077300--Sobic004G282601 Sobic009G077300--Sobic009G143200 Sobic007G187700 Sobic007G187700 Sobic009G077300--Sobic007G187700 Sobic001G143400 Sobic001G143400 Sobic004G003700--Sobic001G143400 Sobic007G209200 Sobic007G209200 Sobic004G003700--Sobic007G209200 Sobic010G168700 Sobic010G168700 Sobic004G003700--Sobic010G168700 Sobic007G147200 Sobic007G147200 Sobic004G003700--Sobic007G147200 Sobic004G003700--Sobic006G221800 Sobic009G047500 Sobic009G047500 Sobic004G003700--Sobic009G047500 Sobic004G003700--Sobic001G101700 Sobic005G168400 Sobic005G168400 Sobic004G003700--Sobic005G168400 Sobic008G138000 Sobic008G138000 Sobic004G003700--Sobic008G138000 Sobic001G101700--Sobic006G221800 Sobic010G255000 Sobic010G255000 Sobic001G101700--Sobic010G255000 Sobic001G101700--Sobic004G003700 Sobic001G101700--Sobic007G147200 Sobic007G201900 Sobic007G201900 Sobic001G101700--Sobic007G201900 Sobic001G101700--Sobic007G209200 Sobic001G101700--Sobic008G151600 Sobic009G057800 Sobic009G057800 Sobic001G101700--Sobic009G057800 Sobic001G101700--Sobic001G143400 Sobic001G496400--Sobic006G221800 Sobic001G496400--Sobic007G209200 Sobic001G496400--Sobic008G114900 Sobic006G219500 Sobic006G219500 Sobic001G496400--Sobic006G219500 Sobic001G496400--Sobic004G003700 Sobic008G125700 Sobic008G125700 Sobic001G496400--Sobic008G125700 Sobic001G496400--Sobic006G124400 Sobic010G119300 Sobic010G119300 Sobic001G496400--Sobic010G119300 Sobic001G496400--Sobic001G101700 Sobic006G221300--Sobic009G127800 Sobic006G221300--Sobic001G054700 Sobic006G221300--Sobic009G077300 Sobic006G221300--Sobic005G153000 Sobic006G221300--Sobic009G143200 Sobic006G221300--Sobic004G108400 Sobic004G052200 Sobic004G052200 Sobic006G221300--Sobic004G052200 Sobic009G225500 Sobic009G225500 Sobic006G221300--Sobic009G225500 Sobic008G052300 Sobic008G052300 Sobic006G221300--Sobic008G052300
Octagon: transcription factors


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