Gene annotation
Transcriptome id Sobic.001G101700.2
Synonym GIF, ATGIF1, GIF1, AN3, Sb01g009080
Functional annotation OsGIF1(Ortholog in rice:He et al. (2017)) (PubMedID : 31659832)
GRF-interacting factor 1, putative, expressed
UniProt C5WLX4
Pfam PF05030
Panther DB PTHR23107 PTHR23107:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G28640 : SSXT family protein
RAP-DB (Rice) LOC_Os03g52320.1 : GRF-interacting factor 1, putative, expressed
MaizeGDB (Corn) Zm00025a008030
Brachypodium KQK13366
Barley HORVU4Hr1G010610.2 , HORVU4Hr1G010610.3 , HORVU4Hr1G010610.1 , HORVU4Hr1G010610.6 , HORVU4Hr1G010610.4 , HORVU4Hr1G010610.7 , HORVU4Hr1G010610.5
Wheat TraesCS4B02G064000 , TraesCS4A02G250600 , TraesCS4D02G062900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
2 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
3 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -
4 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
5 Sobic.007G201900 expressed protein -
6 Sobic.007G209200 CUP-SHAPED COTYLEDON3, putative, expressed -
7 Sobic.008G151600 PMR5, putative, expressed -
8 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
9 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
10 Sobic.002G050700 tesmin/TSO1-like CXC domain containing protein, expressed -
11 Sobic.008G138000 XH domain containing protein, expressed -
12 Sobic.001G496400 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
13 Sobic.008G114900 rhoGAP domain containing protein, expressed -
14 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
15 Sobic.001G493900 beta-galactosidase, putative, expressed -
16 Sobic.001G101900 SCP-like extracellular protein, expressed -
17 Sobic.002G279400 DUF630/DUF632 domains containing protein, putative, expressed -
18 Sobic.002G027600 receptor protein kinase CLAVATA1 precursor, putative, expressed -
19 Sobic.009G087700 proline-rich family protein, putative, expressed -
20 Sobic.003G019900 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic001G101700 Sobic001G101700 Sobic006G221800 Sobic006G221800 Sobic001G101700--Sobic006G221800 Sobic010G255000 Sobic010G255000 Sobic001G101700--Sobic010G255000 Sobic004G003700 Sobic004G003700 Sobic001G101700--Sobic004G003700 Sobic007G147200 Sobic007G147200 Sobic001G101700--Sobic007G147200 Sobic007G201900 Sobic007G201900 Sobic001G101700--Sobic007G201900 Sobic007G209200 Sobic007G209200 Sobic001G101700--Sobic007G209200 Sobic008G151600 Sobic008G151600 Sobic001G101700--Sobic008G151600 Sobic009G057800 Sobic009G057800 Sobic001G101700--Sobic009G057800 Sobic001G143400 Sobic001G143400 Sobic001G101700--Sobic001G143400 Sobic001G496400 Sobic001G496400 Sobic006G221800--Sobic001G496400 Sobic006G221800--Sobic001G101700 Sobic008G114900 Sobic008G114900 Sobic006G221800--Sobic008G114900 Sobic006G221800--Sobic004G003700 Sobic002G050700 Sobic002G050700 Sobic006G221800--Sobic002G050700 Sobic006G221800--Sobic008G151600 Sobic002G319300 Sobic002G319300 Sobic006G221800--Sobic002G319300 Sobic009G087700 Sobic009G087700 Sobic006G221800--Sobic009G087700 Sobic001G493900 Sobic001G493900 Sobic006G221800--Sobic001G493900 Sobic010G255000--Sobic007G147200 Sobic010G255000--Sobic001G101700 Sobic010G255000--Sobic007G201900 Sobic003G046400 Sobic003G046400 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic007G137101 Sobic007G137101 Sobic010G255000--Sobic007G137101 Sobic001G106500 Sobic001G106500 Sobic010G255000--Sobic001G106500 Sobic007G121200 Sobic007G121200 Sobic010G255000--Sobic007G121200 Sobic010G220800 Sobic010G220800 Sobic010G255000--Sobic010G220800 Sobic004G003700--Sobic001G143400 Sobic004G003700--Sobic007G209200 Sobic010G168700 Sobic010G168700 Sobic004G003700--Sobic010G168700 Sobic004G003700--Sobic007G147200 Sobic004G003700--Sobic006G221800 Sobic009G047500 Sobic009G047500 Sobic004G003700--Sobic009G047500 Sobic004G003700--Sobic001G101700 Sobic005G168400 Sobic005G168400 Sobic004G003700--Sobic005G168400 Sobic008G138000 Sobic008G138000 Sobic004G003700--Sobic008G138000 Sobic010G070900 Sobic010G070900 Sobic007G147200--Sobic010G070900 Sobic007G147200--Sobic010G255000 Sobic007G147200--Sobic004G003700 Sobic007G147200--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic007G147200--Sobic006G163300 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic006G107500 Sobic006G107500 Sobic007G147200--Sobic006G107500 Sobic007G147200--Sobic001G101700 Sobic007G201900--Sobic009G057800 Sobic007G201900--Sobic001G101700 Sobic007G201900--Sobic010G255000 Sobic002G112000 Sobic002G112000 Sobic007G201900--Sobic002G112000 Sobic002G279400 Sobic002G279400 Sobic007G201900--Sobic002G279400 Sobic001G101900 Sobic001G101900 Sobic007G201900--Sobic001G101900 Sobic003G244000 Sobic003G244000 Sobic007G201900--Sobic003G244000 Sobic009G143200 Sobic009G143200 Sobic007G201900--Sobic009G143200 Sobic007G201900--Sobic007G147200 Sobic007G209200--Sobic008G138000 Sobic007G209200--Sobic004G003700 Sobic003G002000 Sobic003G002000 Sobic007G209200--Sobic003G002000 Sobic007G209200--Sobic001G496400 Sobic006G274200 Sobic006G274200 Sobic007G209200--Sobic006G274200 Sobic009G208300 Sobic009G208300 Sobic007G209200--Sobic009G208300 Sobic007G209200--Sobic001G143400 Sobic007G209200--Sobic001G101700 Sobic007G209200--Sobic007G147200 Sobic008G151600--Sobic003G019900 Sobic008G151600--Sobic006G221800 Sobic008G151600--Sobic006G274200 Sobic008G151600--Sobic001G493900 Sobic008G151600--Sobic001G101700 Sobic010G077000 Sobic010G077000 Sobic008G151600--Sobic010G077000 Sobic007G161600 Sobic007G161600 Sobic008G151600--Sobic007G161600 Sobic005G032600 Sobic005G032600 Sobic008G151600--Sobic005G032600 Sobic008G151600--Sobic007G147200 Sobic009G057800--Sobic007G201900 Sobic009G057800--Sobic002G112000 Sobic009G057800--Sobic001G101700 Sobic009G057800--Sobic002G279400 Sobic009G057800--Sobic008G151600 Sobic009G057800--Sobic007G209200 Sobic009G057800--Sobic010G255000 Sobic009G057800--Sobic009G143200 Sobic003G282500 Sobic003G282500 Sobic009G057800--Sobic003G282500 Sobic001G143400--Sobic004G003700 Sobic001G143400--Sobic010G168700 Sobic001G143400--Sobic005G168400 Sobic001G143400--Sobic007G147200 Sobic001G143400--Sobic010G070900 Sobic001G143400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic001G143400--Sobic005G199700 Sobic001G143400--Sobic008G138000 Sobic001G143400--Sobic007G209200
Octagon: transcription factors


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