Gene annotation
Transcriptome id Sobic.010G255000.1
Synonym Sb10g029260, LRX1
Functional annotation uncharacterized protein At4g06744 precursor, putative, expressed
UniProt C5Z998
Pfam PF13855
Panther DB PTHR32093 PTHR32093:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G12040 : leucine-rich repeat/extensin 1
RAP-DB (Rice) LOC_Os02g04540.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a016581 , Zm00025a035770 , Zm00025a028597 , Zm00025a043105 , Zm00025a023166 , Zm00025a018931 , Zm00025a041768 , Zm00025a024511 , Zm00025a045149
Brachypodium KQK17443 , PNT72312 , KQK07207 , KQK03023 , KQK04276 , KQJ93239 , KQK12721
Barley HORVU6Hr1G019290.3 , HORVU6Hr1G019290.6 , HORVU6Hr1G019290.5 , HORVU6Hr1G019290.4 , HORVU6Hr1G019290.2 , HORVU6Hr1G019290.1 , HORVU7Hr1G096310.3 , HORVU1Hr1G026650.2 , HORVU1Hr1G026650.3 , HORVU1Hr1G026650.1 , HORVU1Hr1G026650.6 , HORVU1Hr1G026650.4 , HORVU1Hr1G026650.5
Wheat TraesCS5A02G436000 , TraesCS3D02G119800 , TraesCS6B02G136600 , TraesCS5D02G443700 , TraesCS5B02G439200 , TraesCS6A02G108000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
2 Sobic.001G101700 OsGIF1(Ortholog in rice:He et al. (2017))(PubMedID : 31659832)@GRF-interacting factor 1, putative, expressed -
3 Sobic.007G201900 expressed protein -
4 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
5 Sobic.002G255600 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.007G137101 R2R3 MYB transcription factor(PubMedID : 33633216) K09422: transcription factor MYB, plant
7 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
8 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
9 Sobic.010G220800 zinc-binding protein, putative, expressed -
10 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
11 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
12 Sobic.006G221800 OsFBX46 - F-box domain containing protein, expressed -
13 Sobic.003G316601 - -
14 Sobic.003G250100 homeobox domain containing protein, expressed -
15 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
16 Sobic.001G101900 SCP-like extracellular protein, expressed -
17 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
18 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
19 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
20 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -


Gene co-expression network
sample Sobic010G255000 Sobic010G255000 Sobic007G147200 Sobic007G147200 Sobic010G255000--Sobic007G147200 Sobic001G101700 Sobic001G101700 Sobic010G255000--Sobic001G101700 Sobic007G201900 Sobic007G201900 Sobic010G255000--Sobic007G201900 Sobic003G046400 Sobic003G046400 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic007G137101 Sobic007G137101 Sobic010G255000--Sobic007G137101 Sobic001G106500 Sobic001G106500 Sobic010G255000--Sobic001G106500 Sobic007G121200 Sobic007G121200 Sobic010G255000--Sobic007G121200 Sobic010G220800 Sobic010G220800 Sobic010G255000--Sobic010G220800 Sobic010G070900 Sobic010G070900 Sobic007G147200--Sobic010G070900 Sobic007G147200--Sobic010G255000 Sobic004G003700 Sobic004G003700 Sobic007G147200--Sobic004G003700 Sobic007G147200--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic007G147200--Sobic006G163300 Sobic001G143400 Sobic001G143400 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic006G107500 Sobic006G107500 Sobic007G147200--Sobic006G107500 Sobic007G147200--Sobic001G101700 Sobic006G221800 Sobic006G221800 Sobic001G101700--Sobic006G221800 Sobic001G101700--Sobic010G255000 Sobic001G101700--Sobic004G003700 Sobic001G101700--Sobic007G147200 Sobic001G101700--Sobic007G201900 Sobic007G209200 Sobic007G209200 Sobic001G101700--Sobic007G209200 Sobic008G151600 Sobic008G151600 Sobic001G101700--Sobic008G151600 Sobic009G057800 Sobic009G057800 Sobic001G101700--Sobic009G057800 Sobic001G101700--Sobic001G143400 Sobic007G201900--Sobic009G057800 Sobic007G201900--Sobic001G101700 Sobic007G201900--Sobic010G255000 Sobic002G112000 Sobic002G112000 Sobic007G201900--Sobic002G112000 Sobic002G279400 Sobic002G279400 Sobic007G201900--Sobic002G279400 Sobic001G101900 Sobic001G101900 Sobic007G201900--Sobic001G101900 Sobic003G244000 Sobic003G244000 Sobic007G201900--Sobic003G244000 Sobic009G143200 Sobic009G143200 Sobic007G201900--Sobic009G143200 Sobic007G201900--Sobic007G147200 Sobic001G455900 Sobic001G455900 Sobic003G046400--Sobic001G455900 Sobic001G071600 Sobic001G071600 Sobic003G046400--Sobic001G071600 Sobic007G033700 Sobic007G033700 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic006G271600 Sobic006G271600 Sobic003G046400--Sobic006G271600 Sobic010G183800 Sobic010G183800 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic002G255600--Sobic010G220800 Sobic002G255600--Sobic010G255000 Sobic006G076000 Sobic006G076000 Sobic002G255600--Sobic006G076000 Sobic001G313800 Sobic001G313800 Sobic002G255600--Sobic001G313800 Sobic002G343600 Sobic002G343600 Sobic002G255600--Sobic002G343600 Sobic006G006400 Sobic006G006400 Sobic002G255600--Sobic006G006400 Sobic010G261700 Sobic010G261700 Sobic002G255600--Sobic010G261700 Sobic004G086500 Sobic004G086500 Sobic002G255600--Sobic004G086500 Sobic009G059800 Sobic009G059800 Sobic002G255600--Sobic009G059800 Sobic007G137101--Sobic007G121200 Sobic007G137101--Sobic001G106500 Sobic001G456000 Sobic001G456000 Sobic007G137101--Sobic001G456000 Sobic007G137101--Sobic010G183800 Sobic007G137101--Sobic010G255000 Sobic010G048600 Sobic010G048600 Sobic007G137101--Sobic010G048600 Sobic001G459300 Sobic001G459300 Sobic007G137101--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic007G137101--Sobic003G092300 Sobic001G459400 Sobic001G459400 Sobic007G137101--Sobic001G459400 Sobic001G106500--Sobic001G459300 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic005G070700 Sobic005G070700 Sobic001G106500--Sobic005G070700 Sobic001G106500--Sobic003G046400 Sobic002G078900 Sobic002G078900 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800 Sobic003G092400 Sobic003G092400 Sobic007G121200--Sobic003G092400 Sobic007G121200--Sobic001G456000 Sobic007G121200--Sobic003G046400 Sobic007G121200--Sobic010G183800 Sobic007G121200--Sobic001G071600 Sobic007G121200--Sobic002G078900 Sobic007G121200--Sobic010G220800 Sobic002G344201 Sobic002G344201 Sobic007G121200--Sobic002G344201 Sobic007G121200--Sobic007G137101 Sobic010G220800--Sobic001G313800 Sobic004G254300 Sobic004G254300 Sobic010G220800--Sobic004G254300 Sobic007G218400 Sobic007G218400 Sobic010G220800--Sobic007G218400 Sobic002G268300 Sobic002G268300 Sobic010G220800--Sobic002G268300 Sobic010G169200 Sobic010G169200 Sobic010G220800--Sobic010G169200 Sobic010G220800--Sobic009G059800 Sobic009G059932 Sobic009G059932 Sobic010G220800--Sobic009G059932 Sobic009G059866 Sobic009G059866 Sobic010G220800--Sobic009G059866 Sobic002G102800 Sobic002G102800 Sobic010G220800--Sobic002G102800
Octagon: transcription factors


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