Gene annotation
Transcriptome id Sobic.001G456000.4,Sobic.001G456000.3,Sobic.001G456000.1,Sobic.001G456000.2
Synonym Sb01g042850, CRC
Functional annotation YABBY domain containing protein, putative, expressed
UniProt A0A1Z5SAQ4 , A0A1B6QPL9 , A0A1Z5SAR4 , C5NS03
Pfam PF04690
Panther DB PTHR31675 PTHR31675:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development


Orthologs (automatic annotation)
TAIR AT1G69180 : Plant-specific transcription factor YABBY family protein
RAP-DB (Rice) LOC_Os03g11600.2,LOC_Os03g11600.1 : YABBY domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a001296 , Zm00025a053066
Brachypodium KQK22885 , KQK22884 , KQK22887 , KQK22886
Barley HORVU4Hr1G067780.4 , HORVU4Hr1G067780.5 , HORVU4Hr1G067780.2 , HORVU4Hr1G067780.1 , HORVU4Hr1G067780.8 , HORVU4Hr1G067780.9 , HORVU4Hr1G067780.10 , HORVU4Hr1G067780.11 , HORVU4Hr1G067780.12 , HORVU4Hr1G067780.13 , HORVU4Hr1G067780.6 , HORVU4Hr1G067780.7 , HORVU4Hr1G067780.3
Wheat TraesCS4D02G245300 , TraesCS4D02G245300 , TraesCS4D02G245300 , TraesCS4B02G245900 , TraesCS4B02G245900 , TraesCS4B02G245900 , TraesCS4B02G245900 , TraesCS4B02G245900 , TraesCS4A02G058800 , TraesCS4A02G058800 , TraesCS4A02G058800 , TraesCS4A02G058800 , TraesCS4A02G058800
Populus -


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cDNA sequences
Sobic.001G456000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G078900 agenet domain containing protein, expressed -
2 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
3 Sobic.001G459300 - -
4 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
5 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
6 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
7 Sobic.005G070700 - -
8 Sobic.003G243100 expressed protein -
9 Sobic.004G277700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
10 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
11 Sobic.002G344201 - -
12 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
13 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
14 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
15 Sobic.009G048300 transcription factor X1, putative, expressed -
16 Sobic.003G300000 expressed protein -
17 Sobic.001G274300 GASR1 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, putative -
18 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
19 Sobic.004G254300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
20 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -


Gene co-expression network
sample Sobic001G456000 Sobic001G456000 Sobic002G078900 Sobic002G078900 Sobic001G456000--Sobic002G078900 Sobic010G183800 Sobic010G183800 Sobic001G456000--Sobic010G183800 Sobic001G459300 Sobic001G459300 Sobic001G456000--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G456000--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic001G456000--Sobic001G459400 Sobic001G106500 Sobic001G106500 Sobic001G456000--Sobic001G106500 Sobic005G070700 Sobic005G070700 Sobic001G456000--Sobic005G070700 Sobic003G243100 Sobic003G243100 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic003G300000 Sobic003G300000 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic001G071600 Sobic001G071600 Sobic002G078900--Sobic001G071600 Sobic002G078900--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic002G078900--Sobic003G092300 Sobic009G243000 Sobic009G243000 Sobic002G078900--Sobic009G243000 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic009G063700 Sobic009G063700 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic001G459300--Sobic005G070700 Sobic001G459300--Sobic010G048600 Sobic001G459300--Sobic001G459400 Sobic001G459300--Sobic001G106500 Sobic001G274300 Sobic001G274300 Sobic001G459300--Sobic001G274300 Sobic001G459300--Sobic001G456000 Sobic001G459300--Sobic003G092300 Sobic001G459300--Sobic002G078900 Sobic001G459300--Sobic010G183800 Sobic010G048600--Sobic001G459300 Sobic010G048600--Sobic005G070700 Sobic010G048600--Sobic001G459400 Sobic010G048600--Sobic001G106500 Sobic010G048600--Sobic001G274300 Sobic010G048600--Sobic001G456000 Sobic010G048600--Sobic003G092300 Sobic010G048600--Sobic002G078900 Sobic010G048600--Sobic010G183800 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic001G459400--Sobic010G048600 Sobic009G075500 Sobic009G075500 Sobic001G459400--Sobic009G075500 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic001G106500--Sobic001G459300 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic001G106500--Sobic005G070700 Sobic003G046400 Sobic003G046400 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800 Sobic005G070700--Sobic001G459300 Sobic005G070700--Sobic010G048600 Sobic005G070700--Sobic001G459400 Sobic005G070700--Sobic001G274300 Sobic005G070700--Sobic001G106500 Sobic005G070700--Sobic003G092300 Sobic005G070700--Sobic001G456000 Sobic005G070101 Sobic005G070101 Sobic005G070700--Sobic005G070101 Sobic004G168000 Sobic004G168000 Sobic005G070700--Sobic004G168000 Sobic003G243100--Sobic001G456000 Sobic003G243100--Sobic002G078900 Sobic002G344201 Sobic002G344201 Sobic003G243100--Sobic002G344201 Sobic003G243100--Sobic001G459300 Sobic003G243100--Sobic003G300000 Sobic003G092400 Sobic003G092400 Sobic003G243100--Sobic003G092400 Sobic003G243100--Sobic010G048600 Sobic003G243100--Sobic001G459400 Sobic007G121200 Sobic007G121200 Sobic003G243100--Sobic007G121200 Sobic009G059800 Sobic009G059800 Sobic004G277700--Sobic009G059800 Sobic004G086500 Sobic004G086500 Sobic004G277700--Sobic004G086500 Sobic004G277700--Sobic002G344201 Sobic009G059932 Sobic009G059932 Sobic004G277700--Sobic009G059932 Sobic007G218400 Sobic007G218400 Sobic004G277700--Sobic007G218400 Sobic010G237400 Sobic010G237400 Sobic004G277700--Sobic010G237400 Sobic004G277700--Sobic001G456000 Sobic004G254300 Sobic004G254300 Sobic004G277700--Sobic004G254300 Sobic004G056500 Sobic004G056500 Sobic004G277700--Sobic004G056500
Octagon: transcription factors


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