Gene annotation
Transcriptome id Sobic.004G281000.1
Synonym AGL6, SbAGL6, AGAMOUS-like6, Sb04g031750
Functional annotation MIKC-type MADS box transcription factors (PubMedID : 19749151)
OsMADS6 - MADS-box family gene with MIKCc type-box, expressed
UniProt D1L6F4 , C5Y0X9
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF146
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G45650 : AGAMOUS-like 6
RAP-DB (Rice) LOC_Os02g45770.1 : OsMADS6 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a008194 , Zm00025a021527 , Zm00025a032331 , Zm00025a001297 , Zm00025a049936 , Zm00025a047585 , Zm00025a043140 , Zm00025a053503 , Zm00025a000309 , Zm00025a005260 , Zm00025a005261 , Zm00025a053064 , Zm00025a008189 , Zm00025a014307 , Zm00025a016783 , Zm00025a016785 , Zm00025a022983 , Zm00025a048701 , Zm00025a035864
Brachypodium KQK13148 , KQK15335 , KQK15334 , KQK15336 , KQK03211 , KQK03210 , KQK03213 , KQK03212 , KQK19480 , KQK13150 , KQK00790 , KQK22883 , KQJ90931
Barley HORVU5Hr1G095710.11 , HORVU5Hr1G095710.10 , HORVU5Hr1G095710.13 , HORVU5Hr1G095710.12 , HORVU0Hr1G032300.5 , HORVU6Hr1G066140.9 , HORVU6Hr1G066140.8 , HORVU6Hr1G066140.1 , HORVU6Hr1G066140.3 , HORVU6Hr1G066140.2 , HORVU6Hr1G066140.5 , HORVU6Hr1G066140.4 , HORVU6Hr1G066140.7 , HORVU6Hr1G066140.6 , HORVU0Hr1G032300.7 , HORVU0Hr1G032300.1 , HORVU5Hr1G095630.6 , HORVU5Hr1G095630.7 , HORVU5Hr1G095630.2 , HORVU5Hr1G095630.3 , HORVU5Hr1G095630.1 , HORVU5Hr1G095630.8 , HORVU5Hr1G095630.9 , HORVU0Hr1G032300.4 , HORVU0Hr1G032300.6 , HORVU0Hr1G032300.2 , HORVU0Hr1G032300.3 , HORVU6Hr1G066140.10 , HORVU5Hr1G095710.9 , HORVU5Hr1G095710.8 , HORVU5Hr1G095710.1 , HORVU5Hr1G095710.3 , HORVU5Hr1G095710.5 , HORVU5Hr1G095710.4 , HORVU5Hr1G095710.6 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS5B02G396700 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS7A02G122100 , TraesCS7A02G122100 , TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS7B02G020800 , TraesCS5D02G401700 , TraesCS7A02G260900 , TraesCS7D02G120500 , TraesCS5B02G286100 , TraesCS5B02G286100 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS7B02G020900 , TraesCS5A02G391800 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS2B02G200800 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS5B02G396600 , TraesCS5B02G396600 , TraesCS7A02G122000 , TraesCS2A02G174300 , TraesCS2D02G181400 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS7D02G261900 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus -


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cDNA sequences
Sobic.004G281000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
2 Sobic.003G300000 expressed protein -
3 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
4 Sobic.002G078900 agenet domain containing protein, expressed -
5 Sobic.004G234600 expressed protein -
6 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
7 Sobic.001G457600 piwi domain containing protein, expressed -
8 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
9 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
10 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
11 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
13 Sobic.006G097300 F-box protein FBW2, putative, expressed -
14 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
16 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
17 Sobic.009G048300 transcription factor X1, putative, expressed -
18 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
20 Sobic.005G163500 dnaJ domain containing protein, expressed -


Gene co-expression network
sample Sobic004G281000 Sobic004G281000 Sobic010G183800 Sobic010G183800 Sobic004G281000--Sobic010G183800 Sobic003G300000 Sobic003G300000 Sobic004G281000--Sobic003G300000 Sobic009G075500 Sobic009G075500 Sobic004G281000--Sobic009G075500 Sobic002G078900 Sobic002G078900 Sobic004G281000--Sobic002G078900 Sobic004G234600 Sobic004G234600 Sobic004G281000--Sobic004G234600 Sobic001G456000 Sobic001G456000 Sobic004G281000--Sobic001G456000 Sobic001G457600 Sobic001G457600 Sobic004G281000--Sobic001G457600 Sobic001G071600 Sobic001G071600 Sobic004G281000--Sobic001G071600 Sobic001G216400 Sobic001G216400 Sobic004G281000--Sobic001G216400 Sobic003G092300 Sobic003G092300 Sobic010G183800--Sobic003G092300 Sobic001G459400 Sobic001G459400 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic009G063700 Sobic009G063700 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic001G106500 Sobic001G106500 Sobic010G183800--Sobic001G106500 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic006G271600 Sobic006G271600 Sobic003G300000--Sobic006G271600 Sobic003G300000--Sobic004G281000 Sobic001G419500 Sobic001G419500 Sobic003G300000--Sobic001G419500 Sobic009G075500--Sobic001G459400 Sobic009G075500--Sobic001G216400 Sobic009G075500--Sobic009G063700 Sobic009G075500--Sobic003G092300 Sobic002G239101 Sobic002G239101 Sobic009G075500--Sobic002G239101 Sobic006G213900 Sobic006G213900 Sobic009G075500--Sobic006G213900 Sobic009G075500--Sobic001G158100 Sobic009G075500--Sobic003G300000 Sobic004G056000 Sobic004G056000 Sobic009G075500--Sobic004G056000 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic002G078900--Sobic003G092300 Sobic009G243000 Sobic009G243000 Sobic002G078900--Sobic009G243000 Sobic007G128200 Sobic007G128200 Sobic004G234600--Sobic007G128200 Sobic004G234600--Sobic001G216400 Sobic004G234600--Sobic009G063700 Sobic002G053350 Sobic002G053350 Sobic004G234600--Sobic002G053350 Sobic004G234600--Sobic001G457600 Sobic004G234600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic004G234600--Sobic010G194600 Sobic004G234600--Sobic001G158100 Sobic004G234600--Sobic010G183800 Sobic001G456000--Sobic002G078900 Sobic001G456000--Sobic010G183800 Sobic001G456000--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G456000--Sobic010G048600 Sobic001G456000--Sobic001G459400 Sobic001G456000--Sobic001G106500 Sobic005G070700 Sobic005G070700 Sobic001G456000--Sobic005G070700 Sobic003G243100 Sobic003G243100 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic001G137500 Sobic001G137500 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic002G258000 Sobic002G258000 Sobic001G457600--Sobic002G258000 Sobic001G457600--Sobic007G128200 Sobic001G457600--Sobic004G234600 Sobic001G457600--Sobic009G063700 Sobic001G457600--Sobic004G281000 Sobic007G193300 Sobic007G193300 Sobic001G457600--Sobic007G193300 Sobic001G071600--Sobic006G271600 Sobic003G046400 Sobic003G046400 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic009G048300 Sobic009G048300 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic001G071600--Sobic004G281000 Sobic001G216400--Sobic009G075500 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic005G166100 Sobic005G166100 Sobic001G216400--Sobic005G166100 Sobic001G216400--Sobic001G419500 Sobic003G381100 Sobic003G381100 Sobic001G216400--Sobic003G381100 Sobic001G216400--Sobic006G213900 Sobic001G216400--Sobic007G193300 Sobic001G216400--Sobic004G056000
Octagon: transcription factors


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