Gene annotation
Transcriptome id Sobic.009G243000.1
Synonym Sb09g029460
Functional annotation OsFBL2 - F-box domain and LRR containing protein, expressed
UniProt C5YW45
Pfam PF00646 PF08387
Panther DB PTHR32212 PTHR32212:SF113
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G13570 : F-box/RNI-like superfamily protein
RAP-DB (Rice) LOC_Os01g41530.1 : OsFBL2 - F-box domain and LRR containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU4Hr1G021110.1 , HORVU4Hr1G021120.1 , HORVU2Hr1G009570.1 , HORVU4Hr1G021110.2
Wheat TraesCS4D02G113200 , TraesCS6B02G140800 , TraesCS2D02G019000 , TraesCS4B02G115500 , TraesCS4A02G199900 , TraesCS6D02G101900
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
2 Sobic.002G078900 agenet domain containing protein, expressed -
3 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
4 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
6 Sobic.003G006000 expressed protein -
7 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
8 Sobic.001G137600 ankyrin, putative, expressed -
9 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
10 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
11 Sobic.001G457600 piwi domain containing protein, expressed -
12 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
13 Sobic.001G137500 ankyrin, putative, expressed -
14 Sobic.003G300000 expressed protein -
15 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
16 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
17 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
18 Sobic.001G137400 ankyrin, putative, expressed -
19 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
20 Sobic.009G048300 transcription factor X1, putative, expressed -


Gene co-expression network
sample Sobic009G243000 Sobic009G243000 Sobic007G033700 Sobic007G033700 Sobic009G243000--Sobic007G033700 Sobic002G078900 Sobic002G078900 Sobic009G243000--Sobic002G078900 Sobic006G271600 Sobic006G271600 Sobic009G243000--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic003G006000 Sobic003G006000 Sobic009G243000--Sobic003G006000 Sobic003G046400 Sobic003G046400 Sobic009G243000--Sobic003G046400 Sobic001G137600 Sobic001G137600 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic007G033700--Sobic001G137600 Sobic001G455900 Sobic001G455900 Sobic007G033700--Sobic001G455900 Sobic006G163300 Sobic006G163300 Sobic007G033700--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic004G237000 Sobic004G237000 Sobic007G033700--Sobic004G237000 Sobic001G456000 Sobic001G456000 Sobic002G078900--Sobic001G456000 Sobic010G183800 Sobic010G183800 Sobic002G078900--Sobic010G183800 Sobic001G459400 Sobic001G459400 Sobic002G078900--Sobic001G459400 Sobic003G300000 Sobic003G300000 Sobic002G078900--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic006G271600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic006G271600--Sobic009G243000 Sobic006G271600--Sobic003G300000 Sobic006G271600--Sobic002G078900 Sobic006G271600--Sobic003G046400 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic009G048300 Sobic009G048300 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000 Sobic002G205000--Sobic009G243000 Sobic002G205000--Sobic007G033700 Sobic002G205000--Sobic002G078900 Sobic002G205000--Sobic004G237000 Sobic003G091700 Sobic003G091700 Sobic002G205000--Sobic003G091700 Sobic003G319900 Sobic003G319900 Sobic002G205000--Sobic003G319900 Sobic002G205000--Sobic001G137600 Sobic002G205000--Sobic003G006000 Sobic005G131000 Sobic005G131000 Sobic002G205000--Sobic005G131000 Sobic002G178700 Sobic002G178700 Sobic003G006000--Sobic002G178700 Sobic001G137500 Sobic001G137500 Sobic003G006000--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic003G006000--Sobic001G419500 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic001G457600 Sobic001G457600 Sobic003G006000--Sobic001G457600 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic003G046400--Sobic009G048300 Sobic001G137600--Sobic007G033700 Sobic001G137600--Sobic006G271600 Sobic001G137600--Sobic009G243000 Sobic001G137600--Sobic003G046400 Sobic001G137600--Sobic001G455900 Sobic001G137600--Sobic003G117200 Sobic001G137600--Sobic006G163300 Sobic001G137600--Sobic001G071600 Sobic001G137600--Sobic010G194600 Sobic002G258000--Sobic001G137500 Sobic002G258000--Sobic001G457600 Sobic002G258000--Sobic001G419500 Sobic001G137400 Sobic001G137400 Sobic002G258000--Sobic001G137400 Sobic002G258000--Sobic003G006000 Sobic002G258000--Sobic009G243000 Sobic007G193300 Sobic007G193300 Sobic002G258000--Sobic007G193300 Sobic002G258000--Sobic010G194600 Sobic002G258000--Sobic002G178700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.