Gene annotation
Transcriptome id Sobic.003G006000.1
Synonym EDF1, TEM1, Sb03g000720
Functional annotation expressed protein
UniProt C5XJM0
Pfam -
Panther DB PTHR34397 PTHR34397:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G25560 : AP2/B3 transcription factor family protein
RAP-DB (Rice) LOC_Os01g13180.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU3Hr1G031740.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
2 Sobic.001G137500 ankyrin, putative, expressed -
3 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
4 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
5 Sobic.002G078900 agenet domain containing protein, expressed -
6 Sobic.003G088600 transcription factor X1, putative, expressed -
7 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
8 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
9 Sobic.001G457600 piwi domain containing protein, expressed -
10 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
11 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
12 Sobic.003G300000 expressed protein -
13 Sobic.001G137400 ankyrin, putative, expressed -
14 Sobic.008G137700 XH domain containing protein, expressed -
15 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
16 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
17 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
19 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic003G006000 Sobic003G006000 Sobic002G178700 Sobic002G178700 Sobic003G006000--Sobic002G178700 Sobic001G137500 Sobic001G137500 Sobic003G006000--Sobic001G137500 Sobic001G419500 Sobic001G419500 Sobic003G006000--Sobic001G419500 Sobic006G271600 Sobic006G271600 Sobic003G006000--Sobic006G271600 Sobic002G078900 Sobic002G078900 Sobic003G006000--Sobic002G078900 Sobic003G088600 Sobic003G088600 Sobic003G006000--Sobic003G088600 Sobic009G243000 Sobic009G243000 Sobic003G006000--Sobic009G243000 Sobic002G258000 Sobic002G258000 Sobic003G006000--Sobic002G258000 Sobic001G457600 Sobic001G457600 Sobic003G006000--Sobic001G457600 Sobic002G178700--Sobic001G419500 Sobic002G178700--Sobic003G006000 Sobic002G178700--Sobic001G137500 Sobic002G178700--Sobic003G088600 Sobic009G063700 Sobic009G063700 Sobic002G178700--Sobic009G063700 Sobic002G178700--Sobic002G078900 Sobic001G459400 Sobic001G459400 Sobic002G178700--Sobic001G459400 Sobic008G137700 Sobic008G137700 Sobic002G178700--Sobic008G137700 Sobic003G300000 Sobic003G300000 Sobic002G178700--Sobic003G300000 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic007G193300 Sobic007G193300 Sobic001G137500--Sobic007G193300 Sobic001G137400 Sobic001G137400 Sobic001G137500--Sobic001G137400 Sobic010G194600 Sobic010G194600 Sobic001G137500--Sobic010G194600 Sobic001G137500--Sobic003G088600 Sobic001G419500--Sobic002G178700 Sobic001G419500--Sobic001G137500 Sobic001G216400 Sobic001G216400 Sobic001G419500--Sobic001G216400 Sobic001G419500--Sobic003G006000 Sobic001G419500--Sobic001G457600 Sobic001G419500--Sobic009G063700 Sobic001G419500--Sobic002G258000 Sobic001G419500--Sobic010G194600 Sobic009G075500 Sobic009G075500 Sobic001G419500--Sobic009G075500 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic006G271600--Sobic009G243000 Sobic006G271600--Sobic003G300000 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic006G271600--Sobic003G088600 Sobic001G456000 Sobic001G456000 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic003G088600--Sobic008G137700 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G088600--Sobic003G006000 Sobic009G219500 Sobic009G219500 Sobic003G088600--Sobic009G219500 Sobic003G088600--Sobic002G178700 Sobic007G033700 Sobic007G033700 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic001G137600 Sobic001G137600 Sobic009G243000--Sobic001G137600 Sobic009G243000--Sobic002G258000 Sobic002G258000--Sobic001G137500 Sobic002G258000--Sobic001G457600 Sobic002G258000--Sobic001G419500 Sobic002G258000--Sobic001G137400 Sobic002G258000--Sobic003G006000 Sobic002G258000--Sobic009G243000 Sobic002G258000--Sobic007G193300 Sobic002G258000--Sobic010G194600 Sobic002G258000--Sobic002G178700 Sobic001G457600--Sobic001G137500 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic001G457600--Sobic002G258000 Sobic007G128200 Sobic007G128200 Sobic001G457600--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G457600--Sobic004G234600 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic001G457600--Sobic007G193300
Octagon: transcription factors


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