Gene annotation
Transcriptome id Sobic.003G092300.1
Synonym Sb03g007710
Functional annotation expressed protein
UniProt A0A1B6Q2E3
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF46
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37930 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g03190.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS1D02G296000 , TraesCS3D02G017100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
2 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
3 Sobic.001G459300 - -
4 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
5 Sobic.003G300000 expressed protein -
6 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
7 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
8 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.005G070700 - -
10 Sobic.002G078900 agenet domain containing protein, expressed -
11 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
13 Sobic.006G015100 expressed protein -
14 Sobic.006G134700 endoglucanase, putative, expressed -
15 Sobic.009G048300 transcription factor X1, putative, expressed -
16 Sobic.002G239101 - -
17 Sobic.001G463301 - -
18 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
19 Sobic.001G274300 GASR1 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, putative -
20 Sobic.001G235200 MYB family transcription factor, putative, expressed -


Gene co-expression network
sample Sobic003G092300 Sobic003G092300 Sobic001G459400 Sobic001G459400 Sobic003G092300--Sobic001G459400 Sobic010G183800 Sobic010G183800 Sobic003G092300--Sobic010G183800 Sobic001G459300 Sobic001G459300 Sobic003G092300--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic003G092300--Sobic001G106500 Sobic003G300000 Sobic003G300000 Sobic003G092300--Sobic003G300000 Sobic010G048600 Sobic010G048600 Sobic003G092300--Sobic010G048600 Sobic009G075500 Sobic009G075500 Sobic003G092300--Sobic009G075500 Sobic001G158100 Sobic001G158100 Sobic003G092300--Sobic001G158100 Sobic005G070700 Sobic005G070700 Sobic003G092300--Sobic005G070700 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic002G078900 Sobic002G078900 Sobic001G459400--Sobic002G078900 Sobic009G063700 Sobic009G063700 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic001G456000 Sobic001G456000 Sobic010G183800--Sobic001G456000 Sobic010G183800--Sobic009G063700 Sobic001G071600 Sobic001G071600 Sobic010G183800--Sobic001G071600 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic001G459300--Sobic005G070700 Sobic001G459300--Sobic010G048600 Sobic001G459300--Sobic001G459400 Sobic001G459300--Sobic001G106500 Sobic001G274300 Sobic001G274300 Sobic001G459300--Sobic001G274300 Sobic001G459300--Sobic001G456000 Sobic001G459300--Sobic003G092300 Sobic001G459300--Sobic002G078900 Sobic001G459300--Sobic010G183800 Sobic001G106500--Sobic001G459300 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic001G106500--Sobic005G070700 Sobic003G046400 Sobic003G046400 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic006G271600 Sobic006G271600 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic001G419500 Sobic001G419500 Sobic003G300000--Sobic001G419500 Sobic010G048600--Sobic001G459300 Sobic010G048600--Sobic005G070700 Sobic010G048600--Sobic001G459400 Sobic010G048600--Sobic001G106500 Sobic010G048600--Sobic001G274300 Sobic010G048600--Sobic001G456000 Sobic010G048600--Sobic003G092300 Sobic010G048600--Sobic002G078900 Sobic010G048600--Sobic010G183800 Sobic009G075500--Sobic001G459400 Sobic001G216400 Sobic001G216400 Sobic009G075500--Sobic001G216400 Sobic009G075500--Sobic009G063700 Sobic009G075500--Sobic003G092300 Sobic002G239101 Sobic002G239101 Sobic009G075500--Sobic002G239101 Sobic006G213900 Sobic006G213900 Sobic009G075500--Sobic006G213900 Sobic009G075500--Sobic001G158100 Sobic009G075500--Sobic003G300000 Sobic004G056000 Sobic004G056000 Sobic009G075500--Sobic004G056000 Sobic001G158100--Sobic009G063700 Sobic009G211300 Sobic009G211300 Sobic001G158100--Sobic009G211300 Sobic001G158100--Sobic001G459400 Sobic001G158100--Sobic004G056000 Sobic001G158100--Sobic003G092300 Sobic001G158100--Sobic010G183800 Sobic001G158100--Sobic009G075500 Sobic007G128200 Sobic007G128200 Sobic001G158100--Sobic007G128200 Sobic001G158100--Sobic001G216400 Sobic005G070700--Sobic001G459300 Sobic005G070700--Sobic010G048600 Sobic005G070700--Sobic001G459400 Sobic005G070700--Sobic001G274300 Sobic005G070700--Sobic001G106500 Sobic005G070700--Sobic003G092300 Sobic005G070700--Sobic001G456000 Sobic005G070101 Sobic005G070101 Sobic005G070700--Sobic005G070101 Sobic004G168000 Sobic004G168000 Sobic005G070700--Sobic004G168000
Octagon: transcription factors


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