Gene annotation
Transcriptome id Sobic.001G235200.6,Sobic.001G235200.7,Sobic.001G235200.8,Sobic.001G235200.4,Sobic.001G235200.1,Sobic.001G235200.2,Sobic.001G235200.5,Sobic.001G235200.9,Sobic.001G235200.3,Sobic.001G235200.10
Synonym TRFL6
Functional annotation MYB family transcription factor, putative, expressed
UniProt A0A1Z5S6Z9 , A0A1Z5S707 , A0A1B6QKJ4 , A0A1B6QKK6 , A0A1Z5S703 , A0A1Z5S7A4 , A0A1Z5S702 , A0A1B6QKK1 , A0A1B6QKI9 , A0A1Z5S725
Pfam PF00249
Panther DB PTHR21717 PTHR21717:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72650 : TRF-like 6
RAP-DB (Rice) LOC_Os10g30719.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
2 Sobic.003G063700 - -
3 Sobic.006G134700 endoglucanase, putative, expressed -
4 Sobic.002G239101 - -
5 Sobic.001G137800 ankyrin, putative, expressed -
6 Sobic.002G159000 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
7 Sobic.004G168000 pectinesterase inhibitor domain containing protein, putative, expressed -
8 Sobic.005G070101 - -
9 Sobic.009G211300 MATH domain containing protein, expressed -
10 Sobic.006G163200 COBRA, putative, expressed -
11 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
12 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.001G235100 MYB family transcription factor, putative, expressed -
15 Sobic.008G138200 RNA recognition motif family protein, expressed -
16 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
17 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
18 Sobic.007G043000 transcription factor X1, putative, expressed -
19 Sobic.001G141900 OsSub53 - Putative Subtilisin homologue, expressed -
20 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1


Gene co-expression network
sample Sobic001G235200 Sobic001G235200 Sobic006G213900 Sobic006G213900 Sobic001G235200--Sobic006G213900 Sobic003G063700 Sobic003G063700 Sobic001G235200--Sobic003G063700 Sobic006G134700 Sobic006G134700 Sobic001G235200--Sobic006G134700 Sobic002G239101 Sobic002G239101 Sobic001G235200--Sobic002G239101 Sobic001G137800 Sobic001G137800 Sobic001G235200--Sobic001G137800 Sobic002G159000 Sobic002G159000 Sobic001G235200--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic001G235200--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic001G235200--Sobic005G070101 Sobic009G211300 Sobic009G211300 Sobic001G235200--Sobic009G211300 Sobic006G213900--Sobic001G235200 Sobic006G213900--Sobic002G239101 Sobic006G213900--Sobic006G134700 Sobic006G213900--Sobic002G159000 Sobic006G213900--Sobic004G168000 Sobic006G213900--Sobic005G070101 Sobic001G216400 Sobic001G216400 Sobic006G213900--Sobic001G216400 Sobic009G075500 Sobic009G075500 Sobic006G213900--Sobic009G075500 Sobic006G213900--Sobic003G063700 Sobic003G063700--Sobic001G235200 Sobic003G063700--Sobic009G211300 Sobic003G063700--Sobic006G134700 Sobic003G063700--Sobic006G213900 Sobic001G158100 Sobic001G158100 Sobic003G063700--Sobic001G158100 Sobic003G063700--Sobic001G216400 Sobic003G063700--Sobic002G239101 Sobic001G141900 Sobic001G141900 Sobic003G063700--Sobic001G141900 Sobic008G138200 Sobic008G138200 Sobic003G063700--Sobic008G138200 Sobic006G134700--Sobic002G239101 Sobic006G134700--Sobic005G070101 Sobic006G134700--Sobic004G168000 Sobic006G134700--Sobic002G159000 Sobic006G134700--Sobic001G235200 Sobic006G134700--Sobic006G213900 Sobic006G134700--Sobic003G063700 Sobic006G134700--Sobic009G211300 Sobic001G459400 Sobic001G459400 Sobic006G134700--Sobic001G459400 Sobic002G239101--Sobic002G159000 Sobic002G239101--Sobic004G168000 Sobic002G239101--Sobic005G070101 Sobic002G239101--Sobic006G134700 Sobic002G239101--Sobic006G213900 Sobic002G239101--Sobic001G235200 Sobic002G239101--Sobic001G459400 Sobic002G239101--Sobic009G075500 Sobic009G063700 Sobic009G063700 Sobic002G239101--Sobic009G063700 Sobic006G228000 Sobic006G228000 Sobic001G137800--Sobic006G228000 Sobic001G137800--Sobic001G235200 Sobic003G374100 Sobic003G374100 Sobic001G137800--Sobic003G374100 Sobic007G043000 Sobic007G043000 Sobic001G137800--Sobic007G043000 Sobic002G121900 Sobic002G121900 Sobic001G137800--Sobic002G121900 Sobic001G235100 Sobic001G235100 Sobic001G137800--Sobic001G235100 Sobic001G137800--Sobic006G213900 Sobic001G137800--Sobic001G216400 Sobic007G128200 Sobic007G128200 Sobic001G137800--Sobic007G128200 Sobic002G159000--Sobic004G168000 Sobic002G159000--Sobic005G070101 Sobic002G159000--Sobic002G239101 Sobic002G159000--Sobic006G134700 Sobic002G159000--Sobic006G213900 Sobic002G159000--Sobic001G235200 Sobic009G179000 Sobic009G179000 Sobic002G159000--Sobic009G179000 Sobic002G159000--Sobic001G459400 Sobic005G070700 Sobic005G070700 Sobic002G159000--Sobic005G070700 Sobic004G168000--Sobic004G168000 Sobic004G168000--Sobic002G159000 Sobic004G168000--Sobic002G239101 Sobic004G168000--Sobic006G134700 Sobic004G168000--Sobic006G213900 Sobic004G168000--Sobic001G235200 Sobic004G168000--Sobic009G179000 Sobic004G168000--Sobic001G459400 Sobic004G168000--Sobic005G070700 Sobic005G070101--Sobic004G168000 Sobic005G070101--Sobic002G159000 Sobic005G070101--Sobic002G239101 Sobic005G070101--Sobic006G134700 Sobic005G070101--Sobic006G213900 Sobic005G070101--Sobic001G235200 Sobic005G070101--Sobic009G179000 Sobic005G070101--Sobic001G459400 Sobic005G070101--Sobic005G070700 Sobic009G211300--Sobic003G063700 Sobic009G211300--Sobic001G158100 Sobic009G211300--Sobic006G134700 Sobic009G211300--Sobic001G235200 Sobic009G211300--Sobic001G216400 Sobic009G211300--Sobic009G063700 Sobic009G211300--Sobic009G075500 Sobic009G211300--Sobic006G213900 Sobic004G056000 Sobic004G056000 Sobic009G211300--Sobic004G056000
Octagon: transcription factors


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