Gene annotation
Transcriptome id Sobic.006G213900.1
Synonym Sb06g028420, ABS, TT16, AGL32
Functional annotation OsMADS31 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A1Z5REZ9
Pfam PF01486 PF00319
Panther DB PTHR11945 PTHR11945:SF210
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G23260 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os04g52410.2 : OsMADS31 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a042849 , Zm00025a048483 , Zm00025a047505 , Zm00025a032523 , Zm00025a004379 , Zm00025a010822 , Zm00025a044978
Brachypodium PNT61845 , KQJ84578
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G235200 MYB family transcription factor, putative, expressed -
2 Sobic.002G239101 - -
3 Sobic.006G134700 endoglucanase, putative, expressed -
4 Sobic.002G159000 60S ribosomal protein L22-2, putative, expressed K02891: RP-L22e, large subunit ribosomal protein L22e
5 Sobic.004G168000 pectinesterase inhibitor domain containing protein, putative, expressed -
6 Sobic.005G070101 - -
7 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
8 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
9 Sobic.003G063700 - -
10 Sobic.009G211300 MATH domain containing protein, expressed -
11 Sobic.001G137800 ankyrin, putative, expressed -
12 Sobic.001G235100 MYB family transcription factor, putative, expressed -
13 Sobic.006G163200 COBRA, putative, expressed -
14 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.009G179000 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
16 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
17 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
18 Sobic.008G138200 RNA recognition motif family protein, expressed -
19 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
20 Sobic.001G158100 MBTB43 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein


Gene co-expression network
sample Sobic006G213900 Sobic006G213900 Sobic001G235200 Sobic001G235200 Sobic006G213900--Sobic001G235200 Sobic002G239101 Sobic002G239101 Sobic006G213900--Sobic002G239101 Sobic006G134700 Sobic006G134700 Sobic006G213900--Sobic006G134700 Sobic002G159000 Sobic002G159000 Sobic006G213900--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic006G213900--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic006G213900--Sobic005G070101 Sobic001G216400 Sobic001G216400 Sobic006G213900--Sobic001G216400 Sobic009G075500 Sobic009G075500 Sobic006G213900--Sobic009G075500 Sobic003G063700 Sobic003G063700 Sobic006G213900--Sobic003G063700 Sobic001G235200--Sobic006G213900 Sobic001G235200--Sobic003G063700 Sobic001G235200--Sobic006G134700 Sobic001G235200--Sobic002G239101 Sobic001G137800 Sobic001G137800 Sobic001G235200--Sobic001G137800 Sobic001G235200--Sobic002G159000 Sobic001G235200--Sobic004G168000 Sobic001G235200--Sobic005G070101 Sobic009G211300 Sobic009G211300 Sobic001G235200--Sobic009G211300 Sobic002G239101--Sobic002G159000 Sobic002G239101--Sobic004G168000 Sobic002G239101--Sobic005G070101 Sobic002G239101--Sobic006G134700 Sobic002G239101--Sobic006G213900 Sobic002G239101--Sobic001G235200 Sobic001G459400 Sobic001G459400 Sobic002G239101--Sobic001G459400 Sobic002G239101--Sobic009G075500 Sobic009G063700 Sobic009G063700 Sobic002G239101--Sobic009G063700 Sobic006G134700--Sobic002G239101 Sobic006G134700--Sobic005G070101 Sobic006G134700--Sobic004G168000 Sobic006G134700--Sobic002G159000 Sobic006G134700--Sobic001G235200 Sobic006G134700--Sobic006G213900 Sobic006G134700--Sobic003G063700 Sobic006G134700--Sobic009G211300 Sobic006G134700--Sobic001G459400 Sobic002G159000--Sobic004G168000 Sobic002G159000--Sobic005G070101 Sobic002G159000--Sobic002G239101 Sobic002G159000--Sobic006G134700 Sobic002G159000--Sobic006G213900 Sobic002G159000--Sobic001G235200 Sobic009G179000 Sobic009G179000 Sobic002G159000--Sobic009G179000 Sobic002G159000--Sobic001G459400 Sobic005G070700 Sobic005G070700 Sobic002G159000--Sobic005G070700 Sobic004G168000--Sobic004G168000 Sobic004G168000--Sobic002G159000 Sobic004G168000--Sobic002G239101 Sobic004G168000--Sobic006G134700 Sobic004G168000--Sobic006G213900 Sobic004G168000--Sobic001G235200 Sobic004G168000--Sobic009G179000 Sobic004G168000--Sobic001G459400 Sobic004G168000--Sobic005G070700 Sobic005G070101--Sobic004G168000 Sobic005G070101--Sobic002G159000 Sobic005G070101--Sobic002G239101 Sobic005G070101--Sobic006G134700 Sobic005G070101--Sobic006G213900 Sobic005G070101--Sobic001G235200 Sobic005G070101--Sobic009G179000 Sobic005G070101--Sobic001G459400 Sobic005G070101--Sobic005G070700 Sobic001G216400--Sobic009G075500 Sobic004G234600 Sobic004G234600 Sobic001G216400--Sobic004G234600 Sobic001G216400--Sobic009G063700 Sobic005G166100 Sobic005G166100 Sobic001G216400--Sobic005G166100 Sobic001G419500 Sobic001G419500 Sobic001G216400--Sobic001G419500 Sobic003G381100 Sobic003G381100 Sobic001G216400--Sobic003G381100 Sobic001G216400--Sobic006G213900 Sobic007G193300 Sobic007G193300 Sobic001G216400--Sobic007G193300 Sobic004G056000 Sobic004G056000 Sobic001G216400--Sobic004G056000 Sobic009G075500--Sobic001G459400 Sobic009G075500--Sobic001G216400 Sobic009G075500--Sobic009G063700 Sobic003G092300 Sobic003G092300 Sobic009G075500--Sobic003G092300 Sobic009G075500--Sobic002G239101 Sobic009G075500--Sobic006G213900 Sobic001G158100 Sobic001G158100 Sobic009G075500--Sobic001G158100 Sobic003G300000 Sobic003G300000 Sobic009G075500--Sobic003G300000 Sobic009G075500--Sobic004G056000 Sobic003G063700--Sobic001G235200 Sobic003G063700--Sobic009G211300 Sobic003G063700--Sobic006G134700 Sobic003G063700--Sobic006G213900 Sobic003G063700--Sobic001G158100 Sobic003G063700--Sobic001G216400 Sobic003G063700--Sobic002G239101 Sobic001G141900 Sobic001G141900 Sobic003G063700--Sobic001G141900 Sobic008G138200 Sobic008G138200 Sobic003G063700--Sobic008G138200
Octagon: transcription factors


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