Gene annotation
Transcriptome id Sobic.008G138200.2,Sobic.008G138200.1
Synonym Sb08g018890
Functional annotation RNA recognition motif family protein, expressed
UniProt A0A1B6PDK6 , A0A1B6PDL1
Pfam PF12872 PF00076 PF12796
Panther DB PTHR24198 PTHR24198:SF67
NCBI CDD KOG0508; Ankyrin repeat protein KOG4214Myotrophin and similar proteins
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G28880 : Ankyrin repeat family protein
RAP-DB (Rice) LOC_Os12g38460.1 : RNA recognition motif family protein, expressed
MaizeGDB (Corn) Zm00025a004265
Brachypodium PNT62472 , KQJ86193
Barley HORVU5Hr1G020960.9 , HORVU5Hr1G020960.6 , HORVU5Hr1G020960.7 , HORVU5Hr1G020960.4 , HORVU5Hr1G020960.5 , HORVU5Hr1G020960.3 , HORVU5Hr1G020960.14 , HORVU5Hr1G020960.15 , HORVU5Hr1G020960.16 , HORVU5Hr1G020960.17 , HORVU5Hr1G020960.10 , HORVU5Hr1G020960.12 , HORVU5Hr1G020960.19 , HORVU5Hr1G020960.28 , HORVU5Hr1G020960.20 , HORVU5Hr1G020960.23 , HORVU5Hr1G020960.22 , HORVU5Hr1G020960.25 , HORVU5Hr1G020960.24 , HORVU5Hr1G020960.27 , HORVU5Hr1G020960.34 , HORVU5Hr1G020960.35 , HORVU5Hr1G020960.32 , HORVU5Hr1G020960.33 , HORVU5Hr1G020960.30 , HORVU5Hr1G020960.31
Wheat TraesCS5B02G086100 , TraesCS5D02G092300 , TraesCS5D02G092300 , TraesCS5B02G085900 , TraesCS5B02G085900 , TraesCS5D02G092200 , TraesCS5A02G079800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G043000 transcription factor X1, putative, expressed -
2 Sobic.001G235100 MYB family transcription factor, putative, expressed -
3 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
4 Sobic.001G287900 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
5 Sobic.001G141900 OsSub53 - Putative Subtilisin homologue, expressed -
6 Sobic.003G063700 - -
7 Sobic.003G044800 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
8 Sobic.001G152901 "YABBY transcription factor, "(PubMedID : 22581231) -
9 Sobic.001G235200 MYB family transcription factor, putative, expressed -
10 Sobic.006G163200 COBRA, putative, expressed -
11 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
12 Sobic.007G217800 expressed protein -
13 Sobic.002G076600 rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed -
14 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.006G131100 - -
16 Sobic.001G137800 ankyrin, putative, expressed -
17 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
18 Sobic.004G056000 OsMADS29 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.006G189500 OsMADS17 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
20 Sobic.004G195400 heavy metal associated domain containing protein, expressed -


Gene co-expression network
sample Sobic008G138200 Sobic008G138200 Sobic007G043000 Sobic007G043000 Sobic008G138200--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic008G138200--Sobic001G235100 Sobic004G254100 Sobic004G254100 Sobic008G138200--Sobic004G254100 Sobic001G287900 Sobic001G287900 Sobic008G138200--Sobic001G287900 Sobic001G141900 Sobic001G141900 Sobic008G138200--Sobic001G141900 Sobic003G063700 Sobic003G063700 Sobic008G138200--Sobic003G063700 Sobic003G044800 Sobic003G044800 Sobic008G138200--Sobic003G044800 Sobic001G152901 Sobic001G152901 Sobic008G138200--Sobic001G152901 Sobic001G235200 Sobic001G235200 Sobic008G138200--Sobic001G235200 Sobic007G043000--Sobic001G235100 Sobic002G121900 Sobic002G121900 Sobic007G043000--Sobic002G121900 Sobic007G043000--Sobic004G254100 Sobic007G043000--Sobic008G138200 Sobic001G137800 Sobic001G137800 Sobic007G043000--Sobic001G137800 Sobic001G216400 Sobic001G216400 Sobic007G043000--Sobic001G216400 Sobic003G381100 Sobic003G381100 Sobic007G043000--Sobic003G381100 Sobic007G128200 Sobic007G128200 Sobic007G043000--Sobic007G128200 Sobic007G043000--Sobic003G063700 Sobic001G235100--Sobic007G043000 Sobic001G235100--Sobic004G254100 Sobic001G235100--Sobic008G138200 Sobic001G235100--Sobic002G121900 Sobic001G235100--Sobic001G137800 Sobic006G213900 Sobic006G213900 Sobic001G235100--Sobic006G213900 Sobic001G235100--Sobic001G235200 Sobic001G235100--Sobic003G063700 Sobic001G235100--Sobic001G216400 Sobic004G254100--Sobic007G043000 Sobic004G254100--Sobic001G235100 Sobic004G254100--Sobic001G216400 Sobic004G254100--Sobic003G381100 Sobic004G254100--Sobic008G138200 Sobic004G254100--Sobic007G128200 Sobic007G193300 Sobic007G193300 Sobic004G254100--Sobic007G193300 Sobic004G056000 Sobic004G056000 Sobic004G254100--Sobic004G056000 Sobic004G254100--Sobic002G121900 Sobic010G118900 Sobic010G118900 Sobic001G287900--Sobic010G118900 Sobic007G217800 Sobic007G217800 Sobic001G287900--Sobic007G217800 Sobic001G287900--Sobic002G121900 Sobic001G287900--Sobic008G138200 Sobic008G031000 Sobic008G031000 Sobic001G287900--Sobic008G031000 Sobic003G274000 Sobic003G274000 Sobic001G287900--Sobic003G274000 Sobic001G287900--Sobic001G152901 Sobic001G287900--Sobic003G044800 Sobic001G287900--Sobic007G043000 Sobic001G141900--Sobic003G044800 Sobic001G141900--Sobic008G138200 Sobic001G141900--Sobic003G063700 Sobic001G141900--Sobic004G056000 Sobic001G141900--Sobic001G235200 Sobic006G163200 Sobic006G163200 Sobic001G141900--Sobic006G163200 Sobic002G239101 Sobic002G239101 Sobic001G141900--Sobic002G239101 Sobic001G141900--Sobic001G235100 Sobic001G141900--Sobic007G043000 Sobic003G063700--Sobic001G235200 Sobic009G211300 Sobic009G211300 Sobic003G063700--Sobic009G211300 Sobic006G134700 Sobic006G134700 Sobic003G063700--Sobic006G134700 Sobic003G063700--Sobic006G213900 Sobic001G158100 Sobic001G158100 Sobic003G063700--Sobic001G158100 Sobic003G063700--Sobic001G216400 Sobic003G063700--Sobic002G239101 Sobic003G063700--Sobic001G141900 Sobic003G063700--Sobic008G138200 Sobic003G044800--Sobic001G141900 Sobic003G044800--Sobic008G138200 Sobic003G044800--Sobic001G287900 Sobic003G044800--Sobic010G118900 Sobic001G324600 Sobic001G324600 Sobic003G044800--Sobic001G324600 Sobic003G044800--Sobic008G031000 Sobic008G048600 Sobic008G048600 Sobic003G044800--Sobic008G048600 Sobic004G195400 Sobic004G195400 Sobic003G044800--Sobic004G195400 Sobic003G044800--Sobic004G056000 Sobic001G152901--Sobic007G217800 Sobic002G076600 Sobic002G076600 Sobic001G152901--Sobic002G076600 Sobic004G014700 Sobic004G014700 Sobic001G152901--Sobic004G014700 Sobic001G152901--Sobic008G138200 Sobic001G152901--Sobic006G163200 Sobic001G152901--Sobic001G287900 Sobic006G131100 Sobic006G131100 Sobic001G152901--Sobic006G131100 Sobic006G189500 Sobic006G189500 Sobic001G152901--Sobic006G189500 Sobic005G070800 Sobic005G070800 Sobic001G152901--Sobic005G070800 Sobic001G235200--Sobic006G213900 Sobic001G235200--Sobic003G063700 Sobic001G235200--Sobic006G134700 Sobic001G235200--Sobic002G239101 Sobic001G235200--Sobic001G137800 Sobic002G159000 Sobic002G159000 Sobic001G235200--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic001G235200--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic001G235200--Sobic005G070101 Sobic001G235200--Sobic009G211300
Octagon: transcription factors


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