Gene annotation
Transcriptome id Sobic.001G287900.13,Sobic.001G287900.7,Sobic.001G287900.9,Sobic.001G287900.11,Sobic.001G287900.14,Sobic.001G287900.6,Sobic.001G287900.12,Sobic.001G287900.8,Sobic.001G287900.10,Sobic.001G287900.1
Synonym UBP21
Functional annotation ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
UniProt A0A1Z5S8K8 , A0A1Z5S823 , A0A1Z5S8B5 , A0A1Z5S830 , A0A1Z5S829 , A0A1Z5S843 , A0A1Z5S835 , A0A1Z5S836 , A0A1Z5S8B0 , A0A1Z5S825
Pfam PF13423
Panther DB PTHR24006
NCBI CDD KOG1870; Ubiquitin C-terminal hydrolase
KEGG Orthology K11855; ubiquitin carboxyl-terminal hydrolase 36/42
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46740 : ubiquitin-specific protease 21
RAP-DB (Rice) LOC_Os02g55180.1 : ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed
MaizeGDB (Corn) Zm00025a051823
Brachypodium -
Barley -
Wheat TraesCS1D02G196500 , TraesCS1A02G192900
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G118900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
2 Sobic.007G217800 expressed protein -
3 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
4 Sobic.008G138200 RNA recognition motif family protein, expressed -
5 Sobic.008G031000 LTPL26 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.003G274000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.001G152901 "YABBY transcription factor, "(PubMedID : 22581231) -
8 Sobic.003G044800 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
9 Sobic.007G043000 transcription factor X1, putative, expressed -
10 Sobic.004G072900 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.003G317700 cyclic nucleotide-gated ion channel 2, putative, expressed -
12 Sobic.001G324600 cysteine proteinase inhibitor 8 precursor, putative, expressed -
13 Sobic.006G131100 - -
14 Sobic.003G443900 - -
15 Sobic.004G014700 THION20 - Plant thionin family protein precursor, putative, expressed -
16 Sobic.003G411100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
17 Sobic.008G048600 - -
18 Sobic.001G141900 OsSub53 - Putative Subtilisin homologue, expressed -
19 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
20 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -


Gene co-expression network
sample Sobic001G287900 Sobic001G287900 Sobic010G118900 Sobic010G118900 Sobic001G287900--Sobic010G118900 Sobic007G217800 Sobic007G217800 Sobic001G287900--Sobic007G217800 Sobic002G121900 Sobic002G121900 Sobic001G287900--Sobic002G121900 Sobic008G138200 Sobic008G138200 Sobic001G287900--Sobic008G138200 Sobic008G031000 Sobic008G031000 Sobic001G287900--Sobic008G031000 Sobic003G274000 Sobic003G274000 Sobic001G287900--Sobic003G274000 Sobic001G152901 Sobic001G152901 Sobic001G287900--Sobic001G152901 Sobic003G044800 Sobic003G044800 Sobic001G287900--Sobic003G044800 Sobic007G043000 Sobic007G043000 Sobic001G287900--Sobic007G043000 Sobic010G118900--Sobic001G287900 Sobic010G118900--Sobic003G044800 Sobic003G027200 Sobic003G027200 Sobic010G118900--Sobic003G027200 Sobic005G110448 Sobic005G110448 Sobic010G118900--Sobic005G110448 Sobic003G381100 Sobic003G381100 Sobic010G118900--Sobic003G381100 Sobic002G238900 Sobic002G238900 Sobic010G118900--Sobic002G238900 Sobic008G069600 Sobic008G069600 Sobic010G118900--Sobic008G069600 Sobic003G443900 Sobic003G443900 Sobic010G118900--Sobic003G443900 Sobic004G056000 Sobic004G056000 Sobic010G118900--Sobic004G056000 Sobic007G217800--Sobic001G152901 Sobic007G217800--Sobic001G287900 Sobic004G014700 Sobic004G014700 Sobic007G217800--Sobic004G014700 Sobic006G189500 Sobic006G189500 Sobic007G217800--Sobic006G189500 Sobic002G076600 Sobic002G076600 Sobic007G217800--Sobic002G076600 Sobic004G195400 Sobic004G195400 Sobic007G217800--Sobic004G195400 Sobic007G217800--Sobic008G138200 Sobic006G163200 Sobic006G163200 Sobic007G217800--Sobic006G163200 Sobic003G063700 Sobic003G063700 Sobic007G217800--Sobic003G063700 Sobic002G121900--Sobic007G043000 Sobic002G121900--Sobic001G287900 Sobic001G137800 Sobic001G137800 Sobic002G121900--Sobic001G137800 Sobic007G128200 Sobic007G128200 Sobic002G121900--Sobic007G128200 Sobic001G235100 Sobic001G235100 Sobic002G121900--Sobic001G235100 Sobic007G193300 Sobic007G193300 Sobic002G121900--Sobic007G193300 Sobic002G121900--Sobic008G138200 Sobic003G374100 Sobic003G374100 Sobic002G121900--Sobic003G374100 Sobic001G171200 Sobic001G171200 Sobic002G121900--Sobic001G171200 Sobic008G138200--Sobic007G043000 Sobic008G138200--Sobic001G235100 Sobic004G254100 Sobic004G254100 Sobic008G138200--Sobic004G254100 Sobic008G138200--Sobic001G287900 Sobic001G141900 Sobic001G141900 Sobic008G138200--Sobic001G141900 Sobic008G138200--Sobic003G063700 Sobic008G138200--Sobic003G044800 Sobic008G138200--Sobic001G152901 Sobic001G235200 Sobic001G235200 Sobic008G138200--Sobic001G235200 Sobic003G245500 Sobic003G245500 Sobic008G031000--Sobic003G245500 Sobic002G053201 Sobic002G053201 Sobic008G031000--Sobic002G053201 Sobic002G094900 Sobic002G094900 Sobic008G031000--Sobic002G094900 Sobic001G324600 Sobic001G324600 Sobic008G031000--Sobic001G324600 Sobic009G078600 Sobic009G078600 Sobic008G031000--Sobic009G078600 Sobic007G024100 Sobic007G024100 Sobic008G031000--Sobic007G024100 Sobic008G182200 Sobic008G182200 Sobic008G031000--Sobic008G182200 Sobic002G162200 Sobic002G162200 Sobic008G031000--Sobic002G162200 Sobic008G071200 Sobic008G071200 Sobic008G031000--Sobic008G071200 Sobic003G274000--Sobic008G031000 Sobic006G131100 Sobic006G131100 Sobic003G274000--Sobic006G131100 Sobic003G411100 Sobic003G411100 Sobic003G274000--Sobic003G411100 Sobic008G048600 Sobic008G048600 Sobic003G274000--Sobic008G048600 Sobic003G274000--Sobic001G324600 Sobic003G274000--Sobic001G287900 Sobic006G144101 Sobic006G144101 Sobic003G274000--Sobic006G144101 Sobic003G274000--Sobic004G014700 Sobic002G345500 Sobic002G345500 Sobic003G274000--Sobic002G345500 Sobic001G152901--Sobic007G217800 Sobic001G152901--Sobic002G076600 Sobic001G152901--Sobic004G014700 Sobic001G152901--Sobic008G138200 Sobic001G152901--Sobic006G163200 Sobic001G152901--Sobic001G287900 Sobic001G152901--Sobic006G131100 Sobic001G152901--Sobic006G189500 Sobic005G070800 Sobic005G070800 Sobic001G152901--Sobic005G070800 Sobic003G044800--Sobic001G141900 Sobic003G044800--Sobic008G138200 Sobic003G044800--Sobic001G287900 Sobic003G044800--Sobic010G118900 Sobic003G044800--Sobic001G324600 Sobic003G044800--Sobic008G031000 Sobic003G044800--Sobic008G048600 Sobic003G044800--Sobic004G195400 Sobic003G044800--Sobic004G056000 Sobic007G043000--Sobic001G235100 Sobic007G043000--Sobic002G121900 Sobic007G043000--Sobic004G254100 Sobic007G043000--Sobic008G138200 Sobic007G043000--Sobic001G137800 Sobic001G216400 Sobic001G216400 Sobic007G043000--Sobic001G216400 Sobic007G043000--Sobic003G381100 Sobic007G043000--Sobic007G128200 Sobic007G043000--Sobic003G063700
Octagon: transcription factors


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