Gene annotation
Transcriptome id Sobic.003G317700.2,Sobic.003G317700.1
Synonym HLM1, CNGC4, ATCNGC4, DND2, Sb03g036490
Functional annotation cyclic nucleotide-gated ion channel 2, putative, expressed
UniProt C5XLQ4 , A0A1B6Q6H0
Pfam PF00520 PF00027 PF00520
Panther DB PTHR10217 PTHR10217:SF476
NCBI CDD KOG0498; K+-channel ERG and related proteins, contain PAS/PAC sensor domain
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006811ion transport GO:0005216ion channel activity


Orthologs (automatic annotation)
TAIR AT5G54250 : cyclic nucleotide-gated cation channel 4
RAP-DB (Rice) LOC_Os01g57370.1 : cyclic nucleotide-gated ion channel 2, putative, expressed
MaizeGDB (Corn) Zm00025a039884 , Zm00025a016769 , Zm00025a044143 , Zm00025a008228
Brachypodium PNT72987 , KQK05541 , KQK05540 , KQK10082
Barley HORVU3Hr1G076940.9 , HORVU3Hr1G076940.8 , HORVU3Hr1G076940.1 , HORVU3Hr1G076940.3 , HORVU3Hr1G076940.2 , HORVU3Hr1G076940.5 , HORVU3Hr1G076940.6 , HORVU3Hr1G076940.15 , HORVU3Hr1G076940.14 , HORVU3Hr1G076940.11 , HORVU3Hr1G076940.10 , HORVU3Hr1G076940.13 , HORVU3Hr1G076940.12 , HORVU1Hr1G065990.4 , HORVU0Hr1G027310.1 , HORVU0Hr1G027310.5 , HORVU0Hr1G027310.4 , HORVU1Hr1G065990.2 , HORVU1Hr1G065990.3 , HORVU1Hr1G065990.1 , HORVU5Hr1G096440.4 , HORVU5Hr1G096440.1 , HORVU5Hr1G096440.2 , HORVU5Hr1G096440.3 , HORVU1Hr1G066020.1
Wheat TraesCS3A02G316300 , TraesCS3B02G350500 , TraesCS1D02G322000 , TraesCS3D02G315000 , TraesCS1A02G321700 , TraesCS1B02G334100 , TraesCS5B02G400100 , TraesCS5B02G400100 , TraesCS5D02G404600 , TraesCS5D02G404600
Populus -


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cDNA sequences
Sobic.003G317700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G287900 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
2 Sobic.008G138200 RNA recognition motif family protein, expressed -
3 Sobic.010G118900 fasciclin-like arabinogalactan protein 8 precursor, putative, expressed -
4 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
5 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
6 Sobic.007G043000 transcription factor X1, putative, expressed -
7 Sobic.007G217800 expressed protein -
8 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
9 Sobic.002G053350 - -
10 Sobic.003G027200 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.004G072900 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
13 Sobic.004G234600 expressed protein -
14 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
15 Sobic.003G044800 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
16 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
17 Sobic.001G171200 expressed protein -
18 Sobic.001G152901 "YABBY transcription factor, "(PubMedID : 22581231) -
19 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
20 Sobic.007G128200 expressed protein -


Gene co-expression network
sample Sobic003G317700 Sobic003G317700 Sobic001G287900 Sobic001G287900 Sobic003G317700--Sobic001G287900 Sobic008G138200 Sobic008G138200 Sobic003G317700--Sobic008G138200 Sobic010G118900 Sobic010G118900 Sobic003G317700--Sobic010G118900 Sobic004G254100 Sobic004G254100 Sobic003G317700--Sobic004G254100 Sobic002G121900 Sobic002G121900 Sobic003G317700--Sobic002G121900 Sobic007G043000 Sobic007G043000 Sobic003G317700--Sobic007G043000 Sobic007G217800 Sobic007G217800 Sobic003G317700--Sobic007G217800 Sobic003G374100 Sobic003G374100 Sobic003G317700--Sobic003G374100 Sobic002G053350 Sobic002G053350 Sobic003G317700--Sobic002G053350 Sobic001G287900--Sobic010G118900 Sobic001G287900--Sobic007G217800 Sobic001G287900--Sobic002G121900 Sobic001G287900--Sobic008G138200 Sobic008G031000 Sobic008G031000 Sobic001G287900--Sobic008G031000 Sobic003G274000 Sobic003G274000 Sobic001G287900--Sobic003G274000 Sobic001G152901 Sobic001G152901 Sobic001G287900--Sobic001G152901 Sobic003G044800 Sobic003G044800 Sobic001G287900--Sobic003G044800 Sobic001G287900--Sobic007G043000 Sobic008G138200--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic008G138200--Sobic001G235100 Sobic008G138200--Sobic004G254100 Sobic008G138200--Sobic001G287900 Sobic001G141900 Sobic001G141900 Sobic008G138200--Sobic001G141900 Sobic003G063700 Sobic003G063700 Sobic008G138200--Sobic003G063700 Sobic008G138200--Sobic003G044800 Sobic008G138200--Sobic001G152901 Sobic001G235200 Sobic001G235200 Sobic008G138200--Sobic001G235200 Sobic010G118900--Sobic001G287900 Sobic010G118900--Sobic003G044800 Sobic003G027200 Sobic003G027200 Sobic010G118900--Sobic003G027200 Sobic005G110448 Sobic005G110448 Sobic010G118900--Sobic005G110448 Sobic003G381100 Sobic003G381100 Sobic010G118900--Sobic003G381100 Sobic002G238900 Sobic002G238900 Sobic010G118900--Sobic002G238900 Sobic008G069600 Sobic008G069600 Sobic010G118900--Sobic008G069600 Sobic003G443900 Sobic003G443900 Sobic010G118900--Sobic003G443900 Sobic004G056000 Sobic004G056000 Sobic010G118900--Sobic004G056000 Sobic004G254100--Sobic007G043000 Sobic004G254100--Sobic001G235100 Sobic001G216400 Sobic001G216400 Sobic004G254100--Sobic001G216400 Sobic004G254100--Sobic003G381100 Sobic004G254100--Sobic008G138200 Sobic007G128200 Sobic007G128200 Sobic004G254100--Sobic007G128200 Sobic007G193300 Sobic007G193300 Sobic004G254100--Sobic007G193300 Sobic004G254100--Sobic004G056000 Sobic004G254100--Sobic002G121900 Sobic002G121900--Sobic007G043000 Sobic002G121900--Sobic001G287900 Sobic001G137800 Sobic001G137800 Sobic002G121900--Sobic001G137800 Sobic002G121900--Sobic007G128200 Sobic002G121900--Sobic001G235100 Sobic002G121900--Sobic007G193300 Sobic002G121900--Sobic008G138200 Sobic002G121900--Sobic003G374100 Sobic001G171200 Sobic001G171200 Sobic002G121900--Sobic001G171200 Sobic007G043000--Sobic001G235100 Sobic007G043000--Sobic002G121900 Sobic007G043000--Sobic004G254100 Sobic007G043000--Sobic008G138200 Sobic007G043000--Sobic001G137800 Sobic007G043000--Sobic001G216400 Sobic007G043000--Sobic003G381100 Sobic007G043000--Sobic007G128200 Sobic007G043000--Sobic003G063700 Sobic007G217800--Sobic001G152901 Sobic007G217800--Sobic001G287900 Sobic004G014700 Sobic004G014700 Sobic007G217800--Sobic004G014700 Sobic006G189500 Sobic006G189500 Sobic007G217800--Sobic006G189500 Sobic002G076600 Sobic002G076600 Sobic007G217800--Sobic002G076600 Sobic004G195400 Sobic004G195400 Sobic007G217800--Sobic004G195400 Sobic007G217800--Sobic008G138200 Sobic006G163200 Sobic006G163200 Sobic007G217800--Sobic006G163200 Sobic007G217800--Sobic003G063700 Sobic003G374100--Sobic001G137800 Sobic006G228000 Sobic006G228000 Sobic003G374100--Sobic006G228000 Sobic003G129200 Sobic003G129200 Sobic003G374100--Sobic003G129200 Sobic003G374100--Sobic007G043000 Sobic003G374100--Sobic002G121900 Sobic004G234600 Sobic004G234600 Sobic003G374100--Sobic004G234600 Sobic003G374100--Sobic002G053350 Sobic003G374100--Sobic001G235200 Sobic003G374100--Sobic001G235100 Sobic002G053350--Sobic004G234600 Sobic003G088600 Sobic003G088600 Sobic002G053350--Sobic003G088600 Sobic008G137700 Sobic008G137700 Sobic002G053350--Sobic008G137700 Sobic002G053350--Sobic007G128200 Sobic002G053350--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic002G053350--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic002G053350--Sobic010G194600 Sobic002G053350--Sobic007G193300 Sobic001G137500 Sobic001G137500 Sobic002G053350--Sobic001G137500
Octagon: transcription factors


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