Gene annotation
Transcriptome id Sobic.002G121900.3,Sobic.002G121900.4,Sobic.002G121900.1,Sobic.002G121900.2
Synonym Sb02g010550, HEN4
Functional annotation KH domain-containing protein, putative, expressed
UniProt A0A1B6QAR6 , A0A1W0W3J2
Pfam PF13014 PF00013
Panther DB PTHR10288 PTHR10288:SF146
NCBI CDD KOG2190; PolyC-binding proteins alphaCP-1 and related KH domain proteins
KEGG Orthology K13162; poly(rC)-binding protein 2
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G64390 : RNA-binding KH domain-containing protein
RAP-DB (Rice) LOC_Os07g25740.1,LOC_Os09g32300.1 : expressed protein,KH domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a045815
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G121900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G043000 transcription factor X1, putative, expressed -
2 Sobic.001G287900 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
3 Sobic.001G137800 ankyrin, putative, expressed -
4 Sobic.007G128200 expressed protein -
5 Sobic.001G235100 MYB family transcription factor, putative, expressed -
6 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
7 Sobic.008G138200 RNA recognition motif family protein, expressed -
8 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
9 Sobic.001G171200 expressed protein -
10 Sobic.004G254100 pleiotropic drug resistance protein, putative, expressed -
11 Sobic.002G053350 - -
12 Sobic.004G234600 expressed protein -
13 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
14 Sobic.006G097300 F-box protein FBW2, putative, expressed -
15 Sobic.003G381100 OsMADS21 - MADS-box family gene with MIKCc type-box, expressed -
16 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
17 Sobic.003G274000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.001G152901 "YABBY transcription factor, "(PubMedID : 22581231) -
19 Sobic.006G228000 glycine-rich protein 2, putative -
20 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein


Gene co-expression network
sample Sobic002G121900 Sobic002G121900 Sobic007G043000 Sobic007G043000 Sobic002G121900--Sobic007G043000 Sobic001G287900 Sobic001G287900 Sobic002G121900--Sobic001G287900 Sobic001G137800 Sobic001G137800 Sobic002G121900--Sobic001G137800 Sobic007G128200 Sobic007G128200 Sobic002G121900--Sobic007G128200 Sobic001G235100 Sobic001G235100 Sobic002G121900--Sobic001G235100 Sobic007G193300 Sobic007G193300 Sobic002G121900--Sobic007G193300 Sobic008G138200 Sobic008G138200 Sobic002G121900--Sobic008G138200 Sobic003G374100 Sobic003G374100 Sobic002G121900--Sobic003G374100 Sobic001G171200 Sobic001G171200 Sobic002G121900--Sobic001G171200 Sobic007G043000--Sobic001G235100 Sobic007G043000--Sobic002G121900 Sobic004G254100 Sobic004G254100 Sobic007G043000--Sobic004G254100 Sobic007G043000--Sobic008G138200 Sobic007G043000--Sobic001G137800 Sobic001G216400 Sobic001G216400 Sobic007G043000--Sobic001G216400 Sobic003G381100 Sobic003G381100 Sobic007G043000--Sobic003G381100 Sobic007G043000--Sobic007G128200 Sobic003G063700 Sobic003G063700 Sobic007G043000--Sobic003G063700 Sobic010G118900 Sobic010G118900 Sobic001G287900--Sobic010G118900 Sobic007G217800 Sobic007G217800 Sobic001G287900--Sobic007G217800 Sobic001G287900--Sobic002G121900 Sobic001G287900--Sobic008G138200 Sobic008G031000 Sobic008G031000 Sobic001G287900--Sobic008G031000 Sobic003G274000 Sobic003G274000 Sobic001G287900--Sobic003G274000 Sobic001G152901 Sobic001G152901 Sobic001G287900--Sobic001G152901 Sobic003G044800 Sobic003G044800 Sobic001G287900--Sobic003G044800 Sobic001G287900--Sobic007G043000 Sobic006G228000 Sobic006G228000 Sobic001G137800--Sobic006G228000 Sobic001G235200 Sobic001G235200 Sobic001G137800--Sobic001G235200 Sobic001G137800--Sobic003G374100 Sobic001G137800--Sobic007G043000 Sobic001G137800--Sobic002G121900 Sobic001G137800--Sobic001G235100 Sobic006G213900 Sobic006G213900 Sobic001G137800--Sobic006G213900 Sobic001G137800--Sobic001G216400 Sobic001G137800--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic007G128200--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic007G128200--Sobic009G063700 Sobic010G194600 Sobic010G194600 Sobic007G128200--Sobic010G194600 Sobic007G128200--Sobic001G216400 Sobic001G158100 Sobic001G158100 Sobic007G128200--Sobic001G158100 Sobic001G457600 Sobic001G457600 Sobic007G128200--Sobic001G457600 Sobic004G056000 Sobic004G056000 Sobic007G128200--Sobic004G056000 Sobic005G166100 Sobic005G166100 Sobic007G128200--Sobic005G166100 Sobic007G128200--Sobic007G043000 Sobic001G235100--Sobic007G043000 Sobic001G235100--Sobic004G254100 Sobic001G235100--Sobic008G138200 Sobic001G235100--Sobic002G121900 Sobic001G235100--Sobic001G137800 Sobic001G235100--Sobic006G213900 Sobic001G235100--Sobic001G235200 Sobic001G235100--Sobic003G063700 Sobic001G235100--Sobic001G216400 Sobic001G137500 Sobic001G137500 Sobic007G193300--Sobic001G137500 Sobic007G193300--Sobic001G216400 Sobic001G419500 Sobic001G419500 Sobic007G193300--Sobic001G419500 Sobic007G193300--Sobic005G166100 Sobic007G193300--Sobic003G381100 Sobic007G193300--Sobic007G128200 Sobic007G193300--Sobic004G234600 Sobic007G193300--Sobic001G457600 Sobic007G193300--Sobic002G121900 Sobic008G138200--Sobic007G043000 Sobic008G138200--Sobic001G235100 Sobic008G138200--Sobic004G254100 Sobic008G138200--Sobic001G287900 Sobic001G141900 Sobic001G141900 Sobic008G138200--Sobic001G141900 Sobic008G138200--Sobic003G063700 Sobic008G138200--Sobic003G044800 Sobic008G138200--Sobic001G152901 Sobic008G138200--Sobic001G235200 Sobic003G374100--Sobic001G137800 Sobic003G374100--Sobic006G228000 Sobic003G129200 Sobic003G129200 Sobic003G374100--Sobic003G129200 Sobic003G374100--Sobic007G043000 Sobic003G374100--Sobic002G121900 Sobic003G374100--Sobic004G234600 Sobic002G053350 Sobic002G053350 Sobic003G374100--Sobic002G053350 Sobic003G374100--Sobic001G235200 Sobic003G374100--Sobic001G235100 Sobic004G220200 Sobic004G220200 Sobic001G171200--Sobic004G220200 Sobic006G097300 Sobic006G097300 Sobic001G171200--Sobic006G097300 Sobic001G171200--Sobic007G128200 Sobic001G171200--Sobic004G234600 Sobic001G171200--Sobic002G121900 Sobic001G171200--Sobic007G193300 Sobic001G171200--Sobic010G194600 Sobic001G086400 Sobic001G086400 Sobic001G171200--Sobic001G086400 Sobic001G171200--Sobic001G457600
Octagon: transcription factors


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