Gene annotation
Transcriptome id Sobic.006G228000.1
Synonym Sb06g029650, CSDP1
Functional annotation glycine-rich protein 2, putative
UniProt C5YGM9
Pfam PF00098 PF00313
Panther DB PTHR11544
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding GO:0006355regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G36020 : cold shock domain protein 1
RAP-DB (Rice) LOC_Os01g36570.1 : glycine-rich protein 2, putative
MaizeGDB (Corn) Zm00025a057109
Brachypodium KQK12280 , KQK12281
Barley HORVU2Hr1G025660.1 , HORVU1Hr1G064210.12 , HORVU1Hr1G064210.13 , HORVU1Hr1G064210.10 , HORVU1Hr1G064210.11 , HORVU1Hr1G064210.14 , HORVU1Hr1G064210.15 , HORVU4Hr1G032590.1 , HORVU4Hr1G032590.2 , HORVU1Hr1G064210.1 , HORVU1Hr1G064210.2 , HORVU1Hr1G064210.3 , HORVU1Hr1G064210.4 , HORVU1Hr1G064210.5 , HORVU1Hr1G064210.6 , HORVU1Hr1G064210.7 , HORVU1Hr1G064210.8 , HORVU1Hr1G064210.9
Wheat TraesCS1D02G262500 , TraesCS1A02G262400 , TraesCS1B02G273100 , TraesCS6B02G093900
Populus -


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cDNA sequences
Sobic.006G228000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G137800 ankyrin, putative, expressed -
2 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
3 Sobic.007G043000 transcription factor X1, putative, expressed -
4 Sobic.001G235200 MYB family transcription factor, putative, expressed -
5 Sobic.002G237000 fasciclin domain containing protein, expressed -
6 Sobic.004G234600 expressed protein -
7 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.003G300000 expressed protein -
9 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
10 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
11 Sobic.001G216400 nodulin, putative, expressed K07192: flotillin
12 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
13 Sobic.002G053350 - -
14 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.006G097300 F-box protein FBW2, putative, expressed -
16 Sobic.005G166100 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
17 Sobic.002G239101 - -
18 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
19 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
20 Sobic.006G112300 RNA recognition motif family protein, expressed -


Gene co-expression network
sample Sobic006G228000 Sobic006G228000 Sobic001G137800 Sobic001G137800 Sobic006G228000--Sobic001G137800 Sobic003G374100 Sobic003G374100 Sobic006G228000--Sobic003G374100 Sobic007G043000 Sobic007G043000 Sobic006G228000--Sobic007G043000 Sobic001G235200 Sobic001G235200 Sobic006G228000--Sobic001G235200 Sobic002G237000 Sobic002G237000 Sobic006G228000--Sobic002G237000 Sobic004G234600 Sobic004G234600 Sobic006G228000--Sobic004G234600 Sobic003G092300 Sobic003G092300 Sobic006G228000--Sobic003G092300 Sobic003G300000 Sobic003G300000 Sobic006G228000--Sobic003G300000 Sobic002G121900 Sobic002G121900 Sobic006G228000--Sobic002G121900 Sobic001G137800--Sobic006G228000 Sobic001G137800--Sobic001G235200 Sobic001G137800--Sobic003G374100 Sobic001G137800--Sobic007G043000 Sobic001G137800--Sobic002G121900 Sobic001G235100 Sobic001G235100 Sobic001G137800--Sobic001G235100 Sobic006G213900 Sobic006G213900 Sobic001G137800--Sobic006G213900 Sobic001G216400 Sobic001G216400 Sobic001G137800--Sobic001G216400 Sobic007G128200 Sobic007G128200 Sobic001G137800--Sobic007G128200 Sobic003G374100--Sobic001G137800 Sobic003G374100--Sobic006G228000 Sobic003G129200 Sobic003G129200 Sobic003G374100--Sobic003G129200 Sobic003G374100--Sobic007G043000 Sobic003G374100--Sobic002G121900 Sobic003G374100--Sobic004G234600 Sobic002G053350 Sobic002G053350 Sobic003G374100--Sobic002G053350 Sobic003G374100--Sobic001G235200 Sobic003G374100--Sobic001G235100 Sobic007G043000--Sobic001G235100 Sobic007G043000--Sobic002G121900 Sobic004G254100 Sobic004G254100 Sobic007G043000--Sobic004G254100 Sobic008G138200 Sobic008G138200 Sobic007G043000--Sobic008G138200 Sobic007G043000--Sobic001G137800 Sobic007G043000--Sobic001G216400 Sobic003G381100 Sobic003G381100 Sobic007G043000--Sobic003G381100 Sobic007G043000--Sobic007G128200 Sobic003G063700 Sobic003G063700 Sobic007G043000--Sobic003G063700 Sobic001G235200--Sobic006G213900 Sobic001G235200--Sobic003G063700 Sobic006G134700 Sobic006G134700 Sobic001G235200--Sobic006G134700 Sobic002G239101 Sobic002G239101 Sobic001G235200--Sobic002G239101 Sobic001G235200--Sobic001G137800 Sobic002G159000 Sobic002G159000 Sobic001G235200--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic001G235200--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic001G235200--Sobic005G070101 Sobic009G211300 Sobic009G211300 Sobic001G235200--Sobic009G211300 Sobic002G237000--Sobic006G228000 Sobic002G237000--Sobic001G137800 Sobic002G237000--Sobic001G216400 Sobic009G075500 Sobic009G075500 Sobic002G237000--Sobic009G075500 Sobic002G237000--Sobic007G043000 Sobic002G237000--Sobic001G235200 Sobic003G204200 Sobic003G204200 Sobic002G237000--Sobic003G204200 Sobic002G237000--Sobic004G234600 Sobic002G237000--Sobic003G092300 Sobic004G234600--Sobic007G128200 Sobic004G234600--Sobic001G216400 Sobic009G063700 Sobic009G063700 Sobic004G234600--Sobic009G063700 Sobic004G234600--Sobic002G053350 Sobic001G457600 Sobic001G457600 Sobic004G234600--Sobic001G457600 Sobic001G419500 Sobic001G419500 Sobic004G234600--Sobic001G419500 Sobic010G194600 Sobic010G194600 Sobic004G234600--Sobic010G194600 Sobic001G158100 Sobic001G158100 Sobic004G234600--Sobic001G158100 Sobic010G183800 Sobic010G183800 Sobic004G234600--Sobic010G183800 Sobic001G459400 Sobic001G459400 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic001G459300 Sobic001G459300 Sobic003G092300--Sobic001G459300 Sobic001G106500 Sobic001G106500 Sobic003G092300--Sobic001G106500 Sobic003G092300--Sobic003G300000 Sobic010G048600 Sobic010G048600 Sobic003G092300--Sobic010G048600 Sobic003G092300--Sobic009G075500 Sobic003G092300--Sobic001G158100 Sobic005G070700 Sobic005G070700 Sobic003G092300--Sobic005G070700 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic002G078900 Sobic002G078900 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic003G300000--Sobic009G075500 Sobic006G271600 Sobic006G271600 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic003G300000--Sobic001G419500 Sobic002G121900--Sobic007G043000 Sobic001G287900 Sobic001G287900 Sobic002G121900--Sobic001G287900 Sobic002G121900--Sobic001G137800 Sobic002G121900--Sobic007G128200 Sobic002G121900--Sobic001G235100 Sobic007G193300 Sobic007G193300 Sobic002G121900--Sobic007G193300 Sobic002G121900--Sobic008G138200 Sobic002G121900--Sobic003G374100 Sobic001G171200 Sobic001G171200 Sobic002G121900--Sobic001G171200
Octagon: transcription factors


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