Gene annotation
| Transcriptome id | Sobic.003G085900.1 |
|---|---|
| Synonym | TRG1, ATXYL1, XYL1, Sb03g007230 |
| Functional annotation | Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum (PubMedID : 26117170) glycosyl hydrolase, family 31, putative, expressed |
| UniProt | C5XQV7 |
| Pfam | PF16863 PF01055 |
| Panther DB | PTHR22762 PTHR22762:SF56 |
| NCBI CDD | - |
| KEGG Orthology | K15925; alpha-D-xyloside xylohydrolase |
| Gene Ontology | GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds |
Orthologs (automatic annotation)
| TAIR | AT1G68560 : alpha-xylosidase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g03950.1 : glycosyl hydrolase, family 31, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023621 |
| Brachypodium | KQK02530 |
| Barley | HORVU0Hr1G030670.1 , HORVU0Hr1G032510.1 , HORVU0Hr1G035430.1 , HORVU3Hr1G003540.11 , HORVU3Hr1G003540.10 , HORVU3Hr1G003540.13 , HORVU3Hr1G003540.12 , HORVU3Hr1G003540.1 , HORVU3Hr1G003540.2 , HORVU3Hr1G003540.5 , HORVU3Hr1G003540.4 , HORVU3Hr1G003540.7 , HORVU3Hr1G003540.6 , HORVU3Hr1G003540.9 , HORVU3Hr1G003540.8 |
| Wheat | TraesCS3B02G041700 , TraesCS3D02G038300 , TraesCS3A02G042100 |
| Populus | - |
JBrowse
| Sobic.003G085900 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G107500 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 2 | Sobic.002G360600 | expressed protein | - |
| 3 | Sobic.004G237000 | down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 4 | Sobic.010G092400 | glycosyl transferase 8 domain containing protein, putative, expressed | - |
| 5 | Sobic.002G430700 | glycosyltransferase family 43 protein, putative, expressed | - |
| 6 | Sobic.007G147200 | OsSub56 - Putative Subtilisin homologue, expressed | - |
| 7 | Sobic.006G163300 | aldehyde dehydrogenase, putative, expressed | K00128: aldehyde dehydrogenase (NAD+) |
| 8 | Sobic.003G046400 | transcriptional corepressor LEUNIG, putative, expressed | - |
| 9 | Sobic.003G316601 | - | - |
| 10 | Sobic.003G117200 | pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed | - |
| 11 | Sobic.006G228000 | glycine-rich protein 2, putative | - |
| 12 | Sobic.005G020100 | CDC45B - Putative DNA replication initiation protein, expressed | K06628: cell division control protein 45 |
| 13 | Sobic.010G070900 | keratin, type I cytoskeletal 9, putative, expressed | - |
| 14 | Sobic.003G090600 | seven in absentia protein family protein, putative, expressed | - |
| 15 | Sobic.007G033700 | OsFBX309 - F-box domain containing protein, expressed | - |
| 16 | Sobic.006G271600 | RNA recognition motif containing protein, putative, expressed | K13126: polyadenylate-binding protein |
| 17 | Sobic.003G006000 | expressed protein | - |
| 18 | Sobic.001G137600 | ankyrin, putative, expressed | - |
| 19 | Sobic.001G106500 | Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein | - |
| 20 | Sobic.001G271600 | transferase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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