Gene annotation
Transcriptome id Sobic.003G090600.1
Synonym
Functional annotation seven in absentia protein family protein, putative, expressed
UniProt A0A1B6Q272
Pfam -
Panther DB PTHR10315 PTHR10315:SF43
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37930 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g55640.1 : seven in absentia protein family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G430700 glycosyltransferase family 43 protein, putative, expressed -
2 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
3 Sobic.007G023100 CCT motif family protein, expressed -
4 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.001G271600 transferase family protein, putative, expressed -
6 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
7 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
8 Sobic.002G360600 expressed protein -
9 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
10 Sobic.001G137600 ankyrin, putative, expressed -
11 Sobic.001G463301 - -
12 Sobic.003G008800 expressed protein -
13 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
14 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
15 Sobic.006G112300 RNA recognition motif family protein, expressed -
16 Sobic.009G219500 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
17 Sobic.006G228000 glycine-rich protein 2, putative -
18 Sobic.003G019900 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
20 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -


Gene co-expression network
sample Sobic003G090600 Sobic003G090600 Sobic002G430700 Sobic002G430700 Sobic003G090600--Sobic002G430700 Sobic003G085900 Sobic003G085900 Sobic003G090600--Sobic003G085900 Sobic007G023100 Sobic007G023100 Sobic003G090600--Sobic007G023100 Sobic006G107500 Sobic006G107500 Sobic003G090600--Sobic006G107500 Sobic001G271600 Sobic001G271600 Sobic003G090600--Sobic001G271600 Sobic006G163300 Sobic006G163300 Sobic003G090600--Sobic006G163300 Sobic006G271600 Sobic006G271600 Sobic003G090600--Sobic006G271600 Sobic002G360600 Sobic002G360600 Sobic003G090600--Sobic002G360600 Sobic003G046400 Sobic003G046400 Sobic003G090600--Sobic003G046400 Sobic002G430700--Sobic006G107500 Sobic002G430700--Sobic003G085900 Sobic002G430700--Sobic006G163300 Sobic002G430700--Sobic002G360600 Sobic010G070900 Sobic010G070900 Sobic002G430700--Sobic010G070900 Sobic002G430700--Sobic003G090600 Sobic002G430700--Sobic003G046400 Sobic007G147200 Sobic007G147200 Sobic002G430700--Sobic007G147200 Sobic010G014500 Sobic010G014500 Sobic002G430700--Sobic010G014500 Sobic003G085900--Sobic006G107500 Sobic003G085900--Sobic002G360600 Sobic004G237000 Sobic004G237000 Sobic003G085900--Sobic004G237000 Sobic010G092400 Sobic010G092400 Sobic003G085900--Sobic010G092400 Sobic003G085900--Sobic002G430700 Sobic003G085900--Sobic007G147200 Sobic003G085900--Sobic006G163300 Sobic003G085900--Sobic003G046400 Sobic003G316601 Sobic003G316601 Sobic003G085900--Sobic003G316601 Sobic007G023100--Sobic003G090600 Sobic007G023100--Sobic007G147200 Sobic007G023100--Sobic002G430700 Sobic007G023100--Sobic006G107500 Sobic005G062600 Sobic005G062600 Sobic007G023100--Sobic005G062600 Sobic007G033700 Sobic007G033700 Sobic007G023100--Sobic007G033700 Sobic003G019900 Sobic003G019900 Sobic007G023100--Sobic003G019900 Sobic007G128100 Sobic007G128100 Sobic007G023100--Sobic007G128100 Sobic007G023100--Sobic006G163300 Sobic006G107500--Sobic002G360600 Sobic006G107500--Sobic010G070900 Sobic010G087600 Sobic010G087600 Sobic006G107500--Sobic010G087600 Sobic006G107500--Sobic003G085900 Sobic006G107500--Sobic006G163300 Sobic009G146700 Sobic009G146700 Sobic006G107500--Sobic009G146700 Sobic006G107500--Sobic007G147200 Sobic006G107500--Sobic002G430700 Sobic003G338700 Sobic003G338700 Sobic006G107500--Sobic003G338700 Sobic003G365800 Sobic003G365800 Sobic001G271600--Sobic003G365800 Sobic005G020100 Sobic005G020100 Sobic001G271600--Sobic005G020100 Sobic003G374100 Sobic003G374100 Sobic001G271600--Sobic003G374100 Sobic001G271600--Sobic006G107500 Sobic006G228000 Sobic006G228000 Sobic001G271600--Sobic006G228000 Sobic003G295100 Sobic003G295100 Sobic001G271600--Sobic003G295100 Sobic001G271600--Sobic003G090600 Sobic009G169800 Sobic009G169800 Sobic001G271600--Sobic009G169800 Sobic001G271600--Sobic003G085900 Sobic006G163300--Sobic002G360600 Sobic001G455900 Sobic001G455900 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic003G010700 Sobic003G010700 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic006G163300--Sobic007G147200 Sobic006G163300--Sobic007G033700 Sobic006G163300--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic006G163300--Sobic001G101900 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic009G243000 Sobic009G243000 Sobic006G271600--Sobic009G243000 Sobic003G300000 Sobic003G300000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic002G360600--Sobic006G107500 Sobic002G360600--Sobic006G163300 Sobic002G360600--Sobic010G087600 Sobic002G360600--Sobic010G070900 Sobic002G360600--Sobic003G010700 Sobic002G360600--Sobic003G085900 Sobic002G360600--Sobic009G146700 Sobic002G360600--Sobic003G338700 Sobic002G360600--Sobic003G046400 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic001G106500 Sobic001G106500 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300
Octagon: transcription factors


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