Gene annotation
Transcriptome id Sobic.001G455900.1
Synonym LEAFY HULL STERILE, Sb01g042840, AGL4, SEP2, SbLHS1
Functional annotation "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)" (PubMedID : 31659846)
determinacy of the spikelet meristem and determining the identity of lemmas and paleas (PubMedID : 15208396)
OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
UniProt Q6PL51 , A0A1Z5SAP8
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF206
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G02310 : K-box region and MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os03g11614.1 : OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021527 , Zm00025a032331 , Zm00025a001297 , Zm00025a049936 , Zm00025a008194 , Zm00025a047585 , Zm00025a005260 , Zm00025a005261 , Zm00025a053064 , Zm00025a008189 , Zm00025a014307 , Zm00025a016785
Brachypodium KQK15335 , KQK15334 , KQK15336 , KQK19480 , KQK22883 , KQJ90931
Barley HORVU4Hr1G067680.12 , HORVU4Hr1G067680.11 , HORVU4Hr1G067680.10 , HORVU4Hr1G067680.15 , HORVU4Hr1G067680.14 , HORVU5Hr1G095710.11 , HORVU5Hr1G095710.10 , HORVU5Hr1G095710.13 , HORVU5Hr1G095710.12 , HORVU5Hr1G095710.9 , HORVU5Hr1G095710.8 , HORVU5Hr1G095710.1 , HORVU5Hr1G095710.3 , HORVU5Hr1G095710.5 , HORVU5Hr1G095710.4 , HORVU5Hr1G095710.6 , HORVU4Hr1G067680.9 , HORVU4Hr1G067680.8 , HORVU4Hr1G067680.3 , HORVU4Hr1G067680.2 , HORVU4Hr1G067680.1 , HORVU4Hr1G067680.7 , HORVU4Hr1G067680.6 , HORVU4Hr1G067680.5 , HORVU4Hr1G067680.4 , HORVU7Hr1G025700.7 , HORVU7Hr1G025700.6 , HORVU7Hr1G025700.5 , HORVU7Hr1G025700.4 , HORVU7Hr1G025700.3 , HORVU7Hr1G025700.2 , HORVU7Hr1G025700.1 , HORVU7Hr1G025700.8 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS7A02G122100 , TraesCS7A02G122100 , TraesCS7D02G261600 , TraesCS7B02G020800 , TraesCS7D02G120500 , TraesCS4A02G028100 , TraesCS7B02G158600 , TraesCS7D02G120600 , TraesCS4D02G243700 , TraesCS4D02G243700 , TraesCS7B02G020900 , TraesCS4B02G245700 , TraesCS4D02G276100 , TraesCS4A02G058900 , TraesCS4A02G058900 , TraesCS4B02G245800 , TraesCS7A02G122000 , TraesCS7D02G261600 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS4D02G245200 , TraesCS4A02G028200
Populus -


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cDNA sequences
Sobic.001G455900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
2 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
3 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
4 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
5 Sobic.010G247000 expressed protein -
6 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
7 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
8 Sobic.001G137600 ankyrin, putative, expressed -
9 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
10 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
11 Sobic.002G360600 expressed protein -
12 Sobic.009G048300 transcription factor X1, putative, expressed -
13 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
14 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
15 Sobic.009G171800 aldose 1-epimerase, putative, expressed -
16 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
17 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
18 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
19 Sobic.002G078900 agenet domain containing protein, expressed -
20 Sobic.007G121200 YDG/SRA domain containing protein, expressed -


Gene co-expression network
sample Sobic001G455900 Sobic001G455900 Sobic003G046400 Sobic003G046400 Sobic001G455900--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic001G455900--Sobic006G163300 Sobic007G033700 Sobic007G033700 Sobic001G455900--Sobic007G033700 Sobic009G243000 Sobic009G243000 Sobic001G455900--Sobic009G243000 Sobic010G247000 Sobic010G247000 Sobic001G455900--Sobic010G247000 Sobic006G271600 Sobic006G271600 Sobic001G455900--Sobic006G271600 Sobic001G071600 Sobic001G071600 Sobic001G455900--Sobic001G071600 Sobic001G137600 Sobic001G137600 Sobic001G455900--Sobic001G137600 Sobic010G070900 Sobic010G070900 Sobic001G455900--Sobic010G070900 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic001G106500 Sobic001G106500 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic010G183800 Sobic010G183800 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic002G360600 Sobic002G360600 Sobic006G163300--Sobic002G360600 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic003G010700 Sobic003G010700 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic007G147200 Sobic007G147200 Sobic006G163300--Sobic007G147200 Sobic006G163300--Sobic007G033700 Sobic006G107500 Sobic006G107500 Sobic006G163300--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic006G163300--Sobic001G101900 Sobic007G033700--Sobic003G046400 Sobic007G033700--Sobic009G243000 Sobic007G033700--Sobic001G137600 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic004G237000 Sobic004G237000 Sobic007G033700--Sobic004G237000 Sobic009G243000--Sobic007G033700 Sobic002G078900 Sobic002G078900 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic003G006000 Sobic003G006000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic010G247000--Sobic001G455900 Sobic010G247000--Sobic006G163300 Sobic010G247000--Sobic003G010700 Sobic010G247000--Sobic007G033700 Sobic001G143400 Sobic001G143400 Sobic010G247000--Sobic001G143400 Sobic010G247000--Sobic003G046400 Sobic010G276600 Sobic010G276600 Sobic010G247000--Sobic010G276600 Sobic009G171800 Sobic009G171800 Sobic010G247000--Sobic009G171800 Sobic006G014400 Sobic006G014400 Sobic010G247000--Sobic006G014400 Sobic006G271600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic006G271600--Sobic009G243000 Sobic003G300000 Sobic003G300000 Sobic006G271600--Sobic003G300000 Sobic006G271600--Sobic002G078900 Sobic006G271600--Sobic003G046400 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G456000 Sobic001G456000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000 Sobic001G137600--Sobic007G033700 Sobic001G137600--Sobic006G271600 Sobic001G137600--Sobic009G243000 Sobic001G137600--Sobic003G046400 Sobic001G137600--Sobic001G455900 Sobic001G137600--Sobic003G117200 Sobic001G137600--Sobic006G163300 Sobic001G137600--Sobic001G071600 Sobic001G137600--Sobic010G194600 Sobic010G070900--Sobic007G147200 Sobic010G070900--Sobic002G360600 Sobic010G070900--Sobic003G046400 Sobic010G070900--Sobic006G163300 Sobic010G070900--Sobic006G107500 Sobic002G426000 Sobic002G426000 Sobic010G070900--Sobic002G426000 Sobic010G070900--Sobic007G033700 Sobic010G168700 Sobic010G168700 Sobic010G070900--Sobic010G168700 Sobic010G070900--Sobic001G143400
Octagon: transcription factors


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