Gene annotation
Transcriptome id Sobic.007G121200.2
Synonym SUVH5, SGD9, Sb07g019830
Functional annotation YDG/SRA domain containing protein, expressed
UniProt A0A1Z5RAC9
Pfam PF02182
Panther DB PTHR22884 PTHR22884:SF349
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35160 : SU(VAR)3-9 homolog 5
RAP-DB (Rice) LOC_Os08g30910.1 : YDG/SRA domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030993
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.007G121200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
2 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
3 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
4 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
5 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
6 Sobic.002G078900 agenet domain containing protein, expressed -
7 Sobic.010G220800 zinc-binding protein, putative, expressed -
8 Sobic.002G344201 - -
9 Sobic.007G137101 R2R3 MYB transcription factor(PubMedID : 33633216) K09422: transcription factor MYB, plant
10 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
11 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
12 Sobic.002G426000 - -
13 Sobic.003G243100 expressed protein -
14 Sobic.004G254300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
15 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
16 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
17 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
19 Sobic.001G313800 B3 DNA binding domain containing protein, expressed -
20 Sobic.010G169200 homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic007G121200 Sobic007G121200 Sobic003G092400 Sobic003G092400 Sobic007G121200--Sobic003G092400 Sobic001G456000 Sobic001G456000 Sobic007G121200--Sobic001G456000 Sobic003G046400 Sobic003G046400 Sobic007G121200--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic007G121200--Sobic010G183800 Sobic001G071600 Sobic001G071600 Sobic007G121200--Sobic001G071600 Sobic002G078900 Sobic002G078900 Sobic007G121200--Sobic002G078900 Sobic010G220800 Sobic010G220800 Sobic007G121200--Sobic010G220800 Sobic002G344201 Sobic002G344201 Sobic007G121200--Sobic002G344201 Sobic007G137101 Sobic007G137101 Sobic007G121200--Sobic007G137101 Sobic003G092400--Sobic007G121200 Sobic003G092400--Sobic001G456000 Sobic004G254300 Sobic004G254300 Sobic003G092400--Sobic004G254300 Sobic003G092400--Sobic002G344201 Sobic009G019550 Sobic009G019550 Sobic003G092400--Sobic009G019550 Sobic002G268300 Sobic002G268300 Sobic003G092400--Sobic002G268300 Sobic003G243100 Sobic003G243100 Sobic003G092400--Sobic003G243100 Sobic010G237400 Sobic010G237400 Sobic003G092400--Sobic010G237400 Sobic001G106500 Sobic001G106500 Sobic003G092400--Sobic001G106500 Sobic001G456000--Sobic002G078900 Sobic001G456000--Sobic010G183800 Sobic001G459300 Sobic001G459300 Sobic001G456000--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G456000--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic001G456000--Sobic001G459400 Sobic001G456000--Sobic001G106500 Sobic005G070700 Sobic005G070700 Sobic001G456000--Sobic005G070700 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic001G455900 Sobic001G455900 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic007G033700 Sobic007G033700 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic006G271600 Sobic006G271600 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic006G163300 Sobic006G163300 Sobic003G046400--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic003G092300 Sobic003G092300 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic003G300000 Sobic003G300000 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic009G063700 Sobic009G063700 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic001G071600--Sobic009G048300 Sobic009G243000 Sobic009G243000 Sobic001G071600--Sobic009G243000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic002G078900--Sobic001G459300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic001G313800 Sobic001G313800 Sobic010G220800--Sobic001G313800 Sobic010G220800--Sobic004G254300 Sobic007G218400 Sobic007G218400 Sobic010G220800--Sobic007G218400 Sobic010G220800--Sobic002G268300 Sobic010G169200 Sobic010G169200 Sobic010G220800--Sobic010G169200 Sobic009G059800 Sobic009G059800 Sobic010G220800--Sobic009G059800 Sobic009G059932 Sobic009G059932 Sobic010G220800--Sobic009G059932 Sobic009G059866 Sobic009G059866 Sobic010G220800--Sobic009G059866 Sobic002G102800 Sobic002G102800 Sobic010G220800--Sobic002G102800 Sobic002G344201--Sobic009G059800 Sobic002G344201--Sobic004G277700 Sobic002G344201--Sobic004G254300 Sobic002G344201--Sobic009G059932 Sobic002G344201--Sobic007G218400 Sobic002G344201--Sobic010G237400 Sobic002G344201--Sobic001G456000 Sobic002G344201--Sobic009G059866 Sobic004G056500 Sobic004G056500 Sobic002G344201--Sobic004G056500 Sobic007G137101--Sobic007G121200 Sobic007G137101--Sobic001G106500 Sobic007G137101--Sobic001G456000 Sobic007G137101--Sobic010G183800 Sobic010G255000 Sobic010G255000 Sobic007G137101--Sobic010G255000 Sobic007G137101--Sobic010G048600 Sobic007G137101--Sobic001G459300 Sobic007G137101--Sobic003G092300 Sobic007G137101--Sobic001G459400
Octagon: transcription factors


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