Gene annotation
Transcriptome id Sobic.003G243100.1
Synonym Sb03g029950
Functional annotation expressed protein
UniProt A0A1W0VYR1
Pfam -
Panther DB PTHR34380 PTHR34380:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G53220 : -
RAP-DB (Rice) LOC_Os01g46840.1 : expressed protein
MaizeGDB (Corn) Zm00025a028189
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
2 Sobic.002G078900 agenet domain containing protein, expressed -
3 Sobic.002G344201 - -
4 Sobic.001G459300 - -
5 Sobic.003G300000 expressed protein -
6 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
7 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
8 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
9 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
10 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
11 Sobic.004G277700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
12 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
13 Sobic.004G254300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
14 Sobic.005G070700 - -
15 Sobic.009G059800 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
16 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
17 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
19 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.007G218400 - -


Gene co-expression network
sample Sobic003G243100 Sobic003G243100 Sobic001G456000 Sobic001G456000 Sobic003G243100--Sobic001G456000 Sobic002G078900 Sobic002G078900 Sobic003G243100--Sobic002G078900 Sobic002G344201 Sobic002G344201 Sobic003G243100--Sobic002G344201 Sobic001G459300 Sobic001G459300 Sobic003G243100--Sobic001G459300 Sobic003G300000 Sobic003G300000 Sobic003G243100--Sobic003G300000 Sobic003G092400 Sobic003G092400 Sobic003G243100--Sobic003G092400 Sobic010G048600 Sobic010G048600 Sobic003G243100--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic003G243100--Sobic001G459400 Sobic007G121200 Sobic007G121200 Sobic003G243100--Sobic007G121200 Sobic001G456000--Sobic002G078900 Sobic010G183800 Sobic010G183800 Sobic001G456000--Sobic010G183800 Sobic001G456000--Sobic001G459300 Sobic001G456000--Sobic010G048600 Sobic001G456000--Sobic001G459400 Sobic001G106500 Sobic001G106500 Sobic001G456000--Sobic001G106500 Sobic005G070700 Sobic005G070700 Sobic001G456000--Sobic005G070700 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic001G071600 Sobic001G071600 Sobic002G078900--Sobic001G071600 Sobic002G078900--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic002G078900--Sobic003G092300 Sobic009G243000 Sobic009G243000 Sobic002G078900--Sobic009G243000 Sobic009G059800 Sobic009G059800 Sobic002G344201--Sobic009G059800 Sobic002G344201--Sobic004G277700 Sobic004G254300 Sobic004G254300 Sobic002G344201--Sobic004G254300 Sobic009G059932 Sobic009G059932 Sobic002G344201--Sobic009G059932 Sobic007G218400 Sobic007G218400 Sobic002G344201--Sobic007G218400 Sobic010G237400 Sobic010G237400 Sobic002G344201--Sobic010G237400 Sobic002G344201--Sobic001G456000 Sobic009G059866 Sobic009G059866 Sobic002G344201--Sobic009G059866 Sobic004G056500 Sobic004G056500 Sobic002G344201--Sobic004G056500 Sobic001G459300--Sobic005G070700 Sobic001G459300--Sobic010G048600 Sobic001G459300--Sobic001G459400 Sobic001G459300--Sobic001G106500 Sobic001G274300 Sobic001G274300 Sobic001G459300--Sobic001G274300 Sobic001G459300--Sobic001G456000 Sobic001G459300--Sobic003G092300 Sobic001G459300--Sobic002G078900 Sobic001G459300--Sobic010G183800 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic009G063700 Sobic009G063700 Sobic003G300000--Sobic009G063700 Sobic009G075500 Sobic009G075500 Sobic003G300000--Sobic009G075500 Sobic006G271600 Sobic006G271600 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic001G419500 Sobic001G419500 Sobic003G300000--Sobic001G419500 Sobic003G092400--Sobic007G121200 Sobic003G092400--Sobic001G456000 Sobic003G092400--Sobic004G254300 Sobic003G092400--Sobic002G344201 Sobic009G019550 Sobic009G019550 Sobic003G092400--Sobic009G019550 Sobic002G268300 Sobic002G268300 Sobic003G092400--Sobic002G268300 Sobic003G092400--Sobic003G243100 Sobic003G092400--Sobic010G237400 Sobic003G092400--Sobic001G106500 Sobic010G048600--Sobic001G459300 Sobic010G048600--Sobic005G070700 Sobic010G048600--Sobic001G459400 Sobic010G048600--Sobic001G106500 Sobic010G048600--Sobic001G274300 Sobic010G048600--Sobic001G456000 Sobic010G048600--Sobic003G092300 Sobic010G048600--Sobic002G078900 Sobic010G048600--Sobic010G183800 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100 Sobic007G121200--Sobic003G092400 Sobic007G121200--Sobic001G456000 Sobic003G046400 Sobic003G046400 Sobic007G121200--Sobic003G046400 Sobic007G121200--Sobic010G183800 Sobic007G121200--Sobic001G071600 Sobic007G121200--Sobic002G078900 Sobic010G220800 Sobic010G220800 Sobic007G121200--Sobic010G220800 Sobic007G121200--Sobic002G344201 Sobic007G137101 Sobic007G137101 Sobic007G121200--Sobic007G137101
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.