Gene annotation
Transcriptome id Sobic.003G092400.1,Sobic.003G092400.3,Sobic.003G092400.2
Synonym Sb03g007720
Functional annotation expressed protein
UniProt C5XE68
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF46
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G66660 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os01g03190.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU3Hr1G005290.2
Wheat -
Populus -


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cDNA sequences
Sobic.003G092400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
2 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
3 Sobic.004G254300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
4 Sobic.002G344201 - -
5 Sobic.009G019550 - -
6 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
7 Sobic.003G243100 expressed protein -
8 Sobic.010G237400 ZmEBE-1 protein, putative, expressed -
9 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
10 Sobic.009G059800 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
11 Sobic.010G220800 zinc-binding protein, putative, expressed -
12 Sobic.007G218400 - -
13 Sobic.002G078900 agenet domain containing protein, expressed -
14 Sobic.009G059932 - -
15 Sobic.003G369800 - -
16 Sobic.002G426000 - -
17 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.009G059866 - -
19 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
20 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -


Gene co-expression network
sample Sobic003G092400 Sobic003G092400 Sobic007G121200 Sobic007G121200 Sobic003G092400--Sobic007G121200 Sobic001G456000 Sobic001G456000 Sobic003G092400--Sobic001G456000 Sobic004G254300 Sobic004G254300 Sobic003G092400--Sobic004G254300 Sobic002G344201 Sobic002G344201 Sobic003G092400--Sobic002G344201 Sobic009G019550 Sobic009G019550 Sobic003G092400--Sobic009G019550 Sobic002G268300 Sobic002G268300 Sobic003G092400--Sobic002G268300 Sobic003G243100 Sobic003G243100 Sobic003G092400--Sobic003G243100 Sobic010G237400 Sobic010G237400 Sobic003G092400--Sobic010G237400 Sobic001G106500 Sobic001G106500 Sobic003G092400--Sobic001G106500 Sobic007G121200--Sobic003G092400 Sobic007G121200--Sobic001G456000 Sobic003G046400 Sobic003G046400 Sobic007G121200--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic007G121200--Sobic010G183800 Sobic001G071600 Sobic001G071600 Sobic007G121200--Sobic001G071600 Sobic002G078900 Sobic002G078900 Sobic007G121200--Sobic002G078900 Sobic010G220800 Sobic010G220800 Sobic007G121200--Sobic010G220800 Sobic007G121200--Sobic002G344201 Sobic007G137101 Sobic007G137101 Sobic007G121200--Sobic007G137101 Sobic001G456000--Sobic002G078900 Sobic001G456000--Sobic010G183800 Sobic001G459300 Sobic001G459300 Sobic001G456000--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G456000--Sobic010G048600 Sobic001G459400 Sobic001G459400 Sobic001G456000--Sobic001G459400 Sobic001G456000--Sobic001G106500 Sobic005G070700 Sobic005G070700 Sobic001G456000--Sobic005G070700 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic009G059866 Sobic009G059866 Sobic004G254300--Sobic009G059866 Sobic009G059932 Sobic009G059932 Sobic004G254300--Sobic009G059932 Sobic007G218400 Sobic007G218400 Sobic004G254300--Sobic007G218400 Sobic004G056500 Sobic004G056500 Sobic004G254300--Sobic004G056500 Sobic002G102800 Sobic002G102800 Sobic004G254300--Sobic002G102800 Sobic009G059800 Sobic009G059800 Sobic004G254300--Sobic009G059800 Sobic004G254300--Sobic010G237400 Sobic003G369800 Sobic003G369800 Sobic004G254300--Sobic003G369800 Sobic010G144600 Sobic010G144600 Sobic004G254300--Sobic010G144600 Sobic002G344201--Sobic009G059800 Sobic002G344201--Sobic004G277700 Sobic002G344201--Sobic004G254300 Sobic002G344201--Sobic009G059932 Sobic002G344201--Sobic007G218400 Sobic002G344201--Sobic010G237400 Sobic002G344201--Sobic001G456000 Sobic002G344201--Sobic009G059866 Sobic002G344201--Sobic004G056500 Sobic009G019550--Sobic010G237400 Sobic009G019550--Sobic003G369800 Sobic002G346700 Sobic002G346700 Sobic009G019550--Sobic002G346700 Sobic004G316000 Sobic004G316000 Sobic009G019550--Sobic004G316000 Sobic009G019550--Sobic004G056500 Sobic009G019550--Sobic002G102800 Sobic009G019550--Sobic010G144600 Sobic009G019550--Sobic009G059800 Sobic002G258500 Sobic002G258500 Sobic009G019550--Sobic002G258500 Sobic004G000800 Sobic004G000800 Sobic002G268300--Sobic004G000800 Sobic001G313800 Sobic001G313800 Sobic002G268300--Sobic001G313800 Sobic003G238800 Sobic003G238800 Sobic002G268300--Sobic003G238800 Sobic002G268300--Sobic010G220800 Sobic002G268300--Sobic004G254300 Sobic002G426000 Sobic002G426000 Sobic002G268300--Sobic002G426000 Sobic002G268300--Sobic002G344201 Sobic002G268300--Sobic004G056500 Sobic003G231000 Sobic003G231000 Sobic002G268300--Sobic003G231000 Sobic003G243100--Sobic001G456000 Sobic003G243100--Sobic002G078900 Sobic003G243100--Sobic002G344201 Sobic003G243100--Sobic001G459300 Sobic003G300000 Sobic003G300000 Sobic003G243100--Sobic003G300000 Sobic003G243100--Sobic003G092400 Sobic003G243100--Sobic010G048600 Sobic003G243100--Sobic001G459400 Sobic003G243100--Sobic007G121200 Sobic010G237400--Sobic003G369800 Sobic010G237400--Sobic009G059800 Sobic010G237400--Sobic009G059932 Sobic010G237400--Sobic002G102800 Sobic010G237400--Sobic009G059866 Sobic010G237400--Sobic007G218400 Sobic010G237400--Sobic004G056500 Sobic010G237400--Sobic010G144600 Sobic003G175300 Sobic003G175300 Sobic010G237400--Sobic003G175300 Sobic001G106500--Sobic001G459300 Sobic001G106500--Sobic010G048600 Sobic003G092300 Sobic003G092300 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic001G106500--Sobic005G070700 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800
Octagon: transcription factors


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