Gene annotation
Transcriptome id Sobic.007G137101.1
Synonym dwarfing gene 7a, Dw7a
Functional annotation R2R3 MYB transcription factor (PubMedID : 33633216)
UniProt A0A1Z5R9W1
Pfam PF13921
Panther DB PTHR10641 PTHR10641:SF645
NCBI CDD -
KEGG Orthology K09422; transcription factor MYB, plant
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G69560 : myb domain protein 105
RAP-DB (Rice) LOC_Os08g33800.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a025677 , Zm00025a012707 , Zm00025a024116 , Zm00025a024118 , Zm00025a035220 , Zm00025a005931
Brachypodium KQJ89007 , KQJ98405 , KQK03874
Barley HORVU3Hr1G096010.5 , HORVU3Hr1G096010.4 , HORVU3Hr1G038700.5 , HORVU3Hr1G038700.4 , HORVU3Hr1G038700.6 , HORVU3Hr1G038700.3 , HORVU3Hr1G038700.2 , HORVU3Hr1G038700.9 , HORVU3Hr1G096010.7 , HORVU3Hr1G096010.6 , HORVU3Hr1G096010.1 , HORVU3Hr1G096010.3 , HORVU3Hr1G096010.2
Wheat TraesCS3A02G439500 , TraesCS4B02G105200 , TraesCS3D02G432300 , TraesCS3D02G432300 , TraesCS3B02G473600 , TraesCS3B02G217100 , TraesCS4D02G102100 , TraesCS3A02G187800 , TraesCS3D02G191400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G121200 YDG/SRA domain containing protein, expressed -
2 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
3 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
4 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
5 Sobic.010G255000 uncharacterized protein At4g06744 precursor, putative, expressed -
6 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
7 Sobic.001G459300 - -
8 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
9 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
10 Sobic.005G070700 - -
11 Sobic.002G078900 agenet domain containing protein, expressed -
12 Sobic.003G092400 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
13 Sobic.002G344201 - -
14 Sobic.003G404800 OsFBO21 - F-box and other domain containing protein, expressed -
15 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
16 Sobic.010G220800 zinc-binding protein, putative, expressed -
17 Sobic.001G274300 GASR1 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, putative -
18 Sobic.010G169200 homeobox domain containing protein, expressed -
19 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
20 Sobic.006G015100 expressed protein -


Gene co-expression network
sample Sobic007G137101 Sobic007G137101 Sobic007G121200 Sobic007G121200 Sobic007G137101--Sobic007G121200 Sobic001G106500 Sobic001G106500 Sobic007G137101--Sobic001G106500 Sobic001G456000 Sobic001G456000 Sobic007G137101--Sobic001G456000 Sobic010G183800 Sobic010G183800 Sobic007G137101--Sobic010G183800 Sobic010G255000 Sobic010G255000 Sobic007G137101--Sobic010G255000 Sobic010G048600 Sobic010G048600 Sobic007G137101--Sobic010G048600 Sobic001G459300 Sobic001G459300 Sobic007G137101--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic007G137101--Sobic003G092300 Sobic001G459400 Sobic001G459400 Sobic007G137101--Sobic001G459400 Sobic003G092400 Sobic003G092400 Sobic007G121200--Sobic003G092400 Sobic007G121200--Sobic001G456000 Sobic003G046400 Sobic003G046400 Sobic007G121200--Sobic003G046400 Sobic007G121200--Sobic010G183800 Sobic001G071600 Sobic001G071600 Sobic007G121200--Sobic001G071600 Sobic002G078900 Sobic002G078900 Sobic007G121200--Sobic002G078900 Sobic010G220800 Sobic010G220800 Sobic007G121200--Sobic010G220800 Sobic002G344201 Sobic002G344201 Sobic007G121200--Sobic002G344201 Sobic007G121200--Sobic007G137101 Sobic001G106500--Sobic001G459300 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic005G070700 Sobic005G070700 Sobic001G106500--Sobic005G070700 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800 Sobic001G456000--Sobic002G078900 Sobic001G456000--Sobic010G183800 Sobic001G456000--Sobic001G459300 Sobic001G456000--Sobic010G048600 Sobic001G456000--Sobic001G459400 Sobic001G456000--Sobic001G106500 Sobic001G456000--Sobic005G070700 Sobic003G243100 Sobic003G243100 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic003G300000 Sobic003G300000 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic009G063700 Sobic009G063700 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic007G147200 Sobic007G147200 Sobic010G255000--Sobic007G147200 Sobic001G101700 Sobic001G101700 Sobic010G255000--Sobic001G101700 Sobic007G201900 Sobic007G201900 Sobic010G255000--Sobic007G201900 Sobic010G255000--Sobic003G046400 Sobic002G255600 Sobic002G255600 Sobic010G255000--Sobic002G255600 Sobic010G255000--Sobic007G137101 Sobic010G255000--Sobic001G106500 Sobic010G255000--Sobic007G121200 Sobic010G255000--Sobic010G220800 Sobic010G048600--Sobic001G459300 Sobic010G048600--Sobic005G070700 Sobic010G048600--Sobic001G459400 Sobic010G048600--Sobic001G106500 Sobic001G274300 Sobic001G274300 Sobic010G048600--Sobic001G274300 Sobic010G048600--Sobic001G456000 Sobic010G048600--Sobic003G092300 Sobic010G048600--Sobic002G078900 Sobic010G048600--Sobic010G183800 Sobic001G459300--Sobic005G070700 Sobic001G459300--Sobic010G048600 Sobic001G459300--Sobic001G459400 Sobic001G459300--Sobic001G106500 Sobic001G459300--Sobic001G274300 Sobic001G459300--Sobic001G456000 Sobic001G459300--Sobic003G092300 Sobic001G459300--Sobic002G078900 Sobic001G459300--Sobic010G183800 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic003G092300--Sobic001G459300 Sobic003G092300--Sobic001G106500 Sobic003G092300--Sobic003G300000 Sobic003G092300--Sobic010G048600 Sobic009G075500 Sobic009G075500 Sobic003G092300--Sobic009G075500 Sobic003G092300--Sobic001G158100 Sobic003G092300--Sobic005G070700 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.