Gene annotation
Transcriptome id Sobic.010G169200.3,Sobic.010G169200.4,Sobic.010G169200.1,Sobic.010G169200.2
Synonym Sb10g022210, ATH1
Functional annotation homeobox domain containing protein, expressed
UniProt A0A194YJS1 , C5Z4P4
Pfam PF05920 PF07526
Panther DB PTHR11850 PTHR11850:SF119
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G32980 : homeobox gene 1
RAP-DB (Rice) LOC_Os02g13310.1 : homeobox domain containing protein, expressed
MaizeGDB (Corn) Zm00025a041173 , Zm00025a051010
Brachypodium -
Barley HORVU7Hr1G088090.8 , HORVU7Hr1G088090.9 , HORVU7Hr1G088090.6 , HORVU7Hr1G088090.7 , HORVU7Hr1G088090.4 , HORVU7Hr1G088090.5 , HORVU7Hr1G088090.1 , HORVU0Hr1G040180.5 , HORVU0Hr1G040180.4 , HORVU0Hr1G040180.3 , HORVU0Hr1G040180.1 , HORVU7Hr1G088090.3 , HORVU7Hr1G088090.10 , HORVU7Hr1G088090.11 , HORVU6Hr1G014680.6 , HORVU6Hr1G014680.5
Wheat TraesCS7B02G269400 , TraesCS7D02G364500 , TraesCS7A02G358300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218400 - -
2 Sobic.010G220800 zinc-binding protein, putative, expressed -
3 Sobic.009G059800 lysine-rich arabinogalactan protein 19 precursor, putative, expressed -
4 Sobic.004G254300 fasciclin-like arabinogalactan precursor protein, putative, expressed -
5 Sobic.009G059932 - -
6 Sobic.010G237400 ZmEBE-1 protein, putative, expressed -
7 Sobic.009G059866 - -
8 Sobic.002G102800 PME/invertase inhibitor, putative, expressed -
9 Sobic.004G056500 - -
10 Sobic.003G369800 - -
11 Sobic.001G313800 B3 DNA binding domain containing protein, expressed -
12 Sobic.002G344201 - -
13 Sobic.010G144600 - -
14 Sobic.009G019550 - -
15 Sobic.010G048500 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
16 Sobic.002G023500 expressed protein -
17 Sobic.003G175700 - -
18 Sobic.007G014300 DEF6 - Defensin and Defensin-like DEFL family, expressed -
19 Sobic.002G268300 3-ketoacyl-CoA synthase precursor, putative, expressed -
20 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase


Gene co-expression network
sample Sobic010G169200 Sobic010G169200 Sobic007G218400 Sobic007G218400 Sobic010G169200--Sobic007G218400 Sobic010G220800 Sobic010G220800 Sobic010G169200--Sobic010G220800 Sobic009G059800 Sobic009G059800 Sobic010G169200--Sobic009G059800 Sobic004G254300 Sobic004G254300 Sobic010G169200--Sobic004G254300 Sobic009G059932 Sobic009G059932 Sobic010G169200--Sobic009G059932 Sobic010G237400 Sobic010G237400 Sobic010G169200--Sobic010G237400 Sobic009G059866 Sobic009G059866 Sobic010G169200--Sobic009G059866 Sobic002G102800 Sobic002G102800 Sobic010G169200--Sobic002G102800 Sobic004G056500 Sobic004G056500 Sobic010G169200--Sobic004G056500 Sobic007G218400--Sobic009G059932 Sobic007G218400--Sobic009G059866 Sobic007G218400--Sobic009G059800 Sobic007G218400--Sobic002G102800 Sobic007G218400--Sobic004G056500 Sobic007G218400--Sobic010G237400 Sobic010G144600 Sobic010G144600 Sobic007G218400--Sobic010G144600 Sobic003G369800 Sobic003G369800 Sobic007G218400--Sobic003G369800 Sobic007G218400--Sobic004G254300 Sobic001G313800 Sobic001G313800 Sobic010G220800--Sobic001G313800 Sobic010G220800--Sobic004G254300 Sobic010G220800--Sobic007G218400 Sobic002G268300 Sobic002G268300 Sobic010G220800--Sobic002G268300 Sobic010G220800--Sobic010G169200 Sobic010G220800--Sobic009G059800 Sobic010G220800--Sobic009G059932 Sobic010G220800--Sobic009G059866 Sobic010G220800--Sobic002G102800 Sobic009G059800--Sobic009G059932 Sobic009G059800--Sobic010G237400 Sobic009G059800--Sobic009G059866 Sobic009G059800--Sobic007G218400 Sobic009G059800--Sobic002G102800 Sobic009G059800--Sobic004G056500 Sobic009G059800--Sobic003G369800 Sobic009G059800--Sobic010G144600 Sobic009G059800--Sobic004G254300 Sobic004G254300--Sobic009G059866 Sobic004G254300--Sobic009G059932 Sobic004G254300--Sobic007G218400 Sobic004G254300--Sobic004G056500 Sobic004G254300--Sobic002G102800 Sobic004G254300--Sobic009G059800 Sobic004G254300--Sobic010G237400 Sobic004G254300--Sobic003G369800 Sobic004G254300--Sobic010G144600 Sobic009G059932--Sobic009G059866 Sobic009G059932--Sobic002G102800 Sobic009G059932--Sobic004G056500 Sobic009G059932--Sobic009G059800 Sobic009G059932--Sobic007G218400 Sobic009G059932--Sobic010G237400 Sobic009G059932--Sobic010G144600 Sobic009G059932--Sobic003G369800 Sobic009G059932--Sobic004G254300 Sobic010G237400--Sobic003G369800 Sobic010G237400--Sobic009G059800 Sobic010G237400--Sobic009G059932 Sobic010G237400--Sobic002G102800 Sobic010G237400--Sobic009G059866 Sobic010G237400--Sobic007G218400 Sobic010G237400--Sobic004G056500 Sobic010G237400--Sobic010G144600 Sobic003G175300 Sobic003G175300 Sobic010G237400--Sobic003G175300 Sobic009G059866--Sobic009G059932 Sobic009G059866--Sobic002G102800 Sobic009G059866--Sobic004G056500 Sobic009G059866--Sobic007G218400 Sobic009G059866--Sobic009G059800 Sobic009G059866--Sobic010G144600 Sobic009G059866--Sobic010G237400 Sobic009G059866--Sobic003G369800 Sobic003G175700 Sobic003G175700 Sobic009G059866--Sobic003G175700 Sobic002G102800--Sobic004G056500 Sobic002G102800--Sobic009G059932 Sobic002G102800--Sobic009G059866 Sobic002G102800--Sobic010G144600 Sobic002G102800--Sobic009G059800 Sobic002G102800--Sobic007G218400 Sobic002G102800--Sobic010G237400 Sobic002G102800--Sobic003G175700 Sobic007G014300 Sobic007G014300 Sobic002G102800--Sobic007G014300 Sobic004G056500--Sobic002G102800 Sobic004G056500--Sobic009G059932 Sobic004G056500--Sobic009G059866 Sobic004G056500--Sobic010G144600 Sobic004G056500--Sobic009G059800 Sobic002G023500 Sobic002G023500 Sobic004G056500--Sobic002G023500 Sobic004G056500--Sobic007G218400 Sobic004G056500--Sobic003G175700 Sobic004G056500--Sobic010G237400
Octagon: transcription factors


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