Gene annotation
Transcriptome id Sobic.003G117200.1
Synonym Sb03g009880
Functional annotation pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed
UniProt A0A1B6Q2N7
Pfam PF00270 PF00642 PF00271
Panther DB PTHR18934 PTHR18934:SF129
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G47680 : zinc finger (CCCH type) helicase family protein
RAP-DB (Rice) LOC_Os01g15300.1 : zinc finger helicase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a035321
Brachypodium KQK03658 , KQK03655 , KQK03654 , KQK03657 , KQK03656 , PNT70279
Barley HORVU3Hr1G035420.7 , HORVU3Hr1G035420.6 , HORVU3Hr1G035420.5 , HORVU3Hr1G035420.4 , HORVU3Hr1G035420.3 , HORVU3Hr1G035420.2 , HORVU3Hr1G035420.1 , HORVU3Hr1G035420.9 , HORVU3Hr1G035420.8 , HORVU3Hr1G035420.11 , HORVU3Hr1G035420.10
Wheat TraesCS1B02G106200 , TraesCS3D02G181200 , TraesCS3D02G181200 , TraesCS1B02G105800 , TraesCS3A02G175700 , TraesCS3B02G205400 , TraesCS3A02G175700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
2 Sobic.002G078900 agenet domain containing protein, expressed -
3 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
4 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
5 Sobic.003G300000 expressed protein -
6 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
7 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
8 Sobic.003G006000 expressed protein -
9 Sobic.009G048300 transcription factor X1, putative, expressed -
10 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
11 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
12 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
13 Sobic.002G178700 ubiquitin fusion protein, putative, expressed -
14 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
15 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
16 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
17 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.003G088600 transcription factor X1, putative, expressed -
19 Sobic.001G137600 ankyrin, putative, expressed -
20 Sobic.001G456000 YABBY domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G117200 Sobic003G117200 Sobic006G271600 Sobic006G271600 Sobic003G117200--Sobic006G271600 Sobic002G078900 Sobic002G078900 Sobic003G117200--Sobic002G078900 Sobic010G183800 Sobic010G183800 Sobic003G117200--Sobic010G183800 Sobic003G046400 Sobic003G046400 Sobic003G117200--Sobic003G046400 Sobic003G300000 Sobic003G300000 Sobic003G117200--Sobic003G300000 Sobic001G071600 Sobic001G071600 Sobic003G117200--Sobic001G071600 Sobic009G243000 Sobic009G243000 Sobic003G117200--Sobic009G243000 Sobic003G006000 Sobic003G006000 Sobic003G117200--Sobic003G006000 Sobic009G048300 Sobic009G048300 Sobic003G117200--Sobic009G048300 Sobic006G271600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic006G271600--Sobic010G194600 Sobic006G271600--Sobic003G117200 Sobic006G271600--Sobic009G243000 Sobic006G271600--Sobic003G300000 Sobic006G271600--Sobic002G078900 Sobic006G271600--Sobic003G046400 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic001G456000 Sobic001G456000 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic001G459400 Sobic001G459400 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic001G106500 Sobic001G106500 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic003G092300 Sobic003G092300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic009G063700 Sobic009G063700 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic001G455900 Sobic001G455900 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic007G033700 Sobic007G033700 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic006G163300 Sobic006G163300 Sobic003G046400--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic003G046400--Sobic010G070900 Sobic003G046400--Sobic009G048300 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic009G075500 Sobic009G075500 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic004G281000 Sobic004G281000 Sobic003G300000--Sobic004G281000 Sobic001G419500 Sobic001G419500 Sobic003G300000--Sobic001G419500 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic001G071600--Sobic004G281000 Sobic009G243000--Sobic007G033700 Sobic009G243000--Sobic002G078900 Sobic009G243000--Sobic006G271600 Sobic009G243000--Sobic001G071600 Sobic002G205000 Sobic002G205000 Sobic009G243000--Sobic002G205000 Sobic009G243000--Sobic003G006000 Sobic009G243000--Sobic003G046400 Sobic001G137600 Sobic001G137600 Sobic009G243000--Sobic001G137600 Sobic002G258000 Sobic002G258000 Sobic009G243000--Sobic002G258000 Sobic002G178700 Sobic002G178700 Sobic003G006000--Sobic002G178700 Sobic001G137500 Sobic001G137500 Sobic003G006000--Sobic001G137500 Sobic003G006000--Sobic001G419500 Sobic003G006000--Sobic006G271600 Sobic003G006000--Sobic002G078900 Sobic003G006000--Sobic003G088600 Sobic003G006000--Sobic009G243000 Sobic003G006000--Sobic002G258000 Sobic001G457600 Sobic001G457600 Sobic003G006000--Sobic001G457600 Sobic009G048300--Sobic001G071600 Sobic009G048300--Sobic010G183800 Sobic009G048300--Sobic002G078900 Sobic009G048300--Sobic001G106500 Sobic009G048300--Sobic003G046400 Sobic009G048300--Sobic003G300000 Sobic009G048300--Sobic003G092300 Sobic009G048300--Sobic001G456000 Sobic009G048300--Sobic001G459400
Octagon: transcription factors


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