Gene annotation
Transcriptome id Sobic.009G048300.2,Sobic.009G048300.1,Sobic.009G048300.3,Sobic.009G048300.4
Synonym RDM12, IDN2, Sb09g004150
Functional annotation transcription factor X1, putative, expressed
UniProt A0A1Z5R1L7 , A0A1Z5R0W3 , C5Z0G9
Pfam PF03470 PF03468 PF03469 PF03468 PF03469
Panther DB PTHR21596 PTHR21596:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48670 : XH/XS domain-containing protein
RAP-DB (Rice) LOC_Os05g06130.1 : transcription factor X1, putative, expressed
MaizeGDB (Corn) Zm00025a038040
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
2 Sobic.010G183800 - K11594: DDX3X, ATP-dependent RNA helicase DDX3X
3 Sobic.002G078900 agenet domain containing protein, expressed -
4 Sobic.001G106500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
5 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
6 Sobic.003G300000 expressed protein -
7 Sobic.003G092300 expressed protein K04506: E3 ubiquitin-protein ligase SIAH1
8 Sobic.001G456000 YABBY domain containing protein, putative, expressed -
9 Sobic.001G459400 B3 DNA binding domain containing protein, expressed -
10 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
11 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
12 Sobic.001G459300 - -
13 Sobic.006G015100 expressed protein -
14 Sobic.004G281000 MIKC-type MADS box transcription factors(PubMedID : 19749151)@OsMADS6 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
15 Sobic.010G048600 UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
16 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
17 Sobic.009G063700 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
18 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
19 Sobic.009G075500 OsMADS58 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
20 Sobic.005G070700 - -


Gene co-expression network
sample Sobic009G048300 Sobic009G048300 Sobic001G071600 Sobic001G071600 Sobic009G048300--Sobic001G071600 Sobic010G183800 Sobic010G183800 Sobic009G048300--Sobic010G183800 Sobic002G078900 Sobic002G078900 Sobic009G048300--Sobic002G078900 Sobic001G106500 Sobic001G106500 Sobic009G048300--Sobic001G106500 Sobic003G046400 Sobic003G046400 Sobic009G048300--Sobic003G046400 Sobic003G300000 Sobic003G300000 Sobic009G048300--Sobic003G300000 Sobic003G092300 Sobic003G092300 Sobic009G048300--Sobic003G092300 Sobic001G456000 Sobic001G456000 Sobic009G048300--Sobic001G456000 Sobic001G459400 Sobic001G459400 Sobic009G048300--Sobic001G459400 Sobic006G271600 Sobic006G271600 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic001G071600--Sobic009G048300 Sobic009G243000 Sobic009G243000 Sobic001G071600--Sobic009G243000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000 Sobic010G183800--Sobic003G092300 Sobic010G183800--Sobic001G459400 Sobic010G183800--Sobic002G078900 Sobic010G183800--Sobic003G300000 Sobic010G183800--Sobic001G456000 Sobic009G063700 Sobic009G063700 Sobic010G183800--Sobic009G063700 Sobic010G183800--Sobic001G071600 Sobic001G158100 Sobic001G158100 Sobic010G183800--Sobic001G158100 Sobic010G183800--Sobic001G106500 Sobic002G078900--Sobic001G456000 Sobic002G078900--Sobic010G183800 Sobic002G078900--Sobic001G459400 Sobic002G078900--Sobic003G300000 Sobic002G078900--Sobic001G106500 Sobic002G078900--Sobic001G071600 Sobic001G459300 Sobic001G459300 Sobic002G078900--Sobic001G459300 Sobic002G078900--Sobic003G092300 Sobic002G078900--Sobic009G243000 Sobic001G106500--Sobic001G459300 Sobic010G048600 Sobic010G048600 Sobic001G106500--Sobic010G048600 Sobic001G106500--Sobic003G092300 Sobic001G106500--Sobic001G456000 Sobic005G070700 Sobic005G070700 Sobic001G106500--Sobic005G070700 Sobic001G106500--Sobic003G046400 Sobic001G106500--Sobic002G078900 Sobic001G106500--Sobic001G459400 Sobic001G106500--Sobic010G183800 Sobic001G455900 Sobic001G455900 Sobic003G046400--Sobic001G455900 Sobic003G046400--Sobic001G071600 Sobic007G033700 Sobic007G033700 Sobic003G046400--Sobic007G033700 Sobic003G046400--Sobic001G106500 Sobic003G046400--Sobic006G271600 Sobic003G046400--Sobic010G183800 Sobic006G163300 Sobic006G163300 Sobic003G046400--Sobic006G163300 Sobic010G070900 Sobic010G070900 Sobic003G046400--Sobic010G070900 Sobic003G046400--Sobic009G048300 Sobic003G300000--Sobic010G183800 Sobic003G300000--Sobic001G459400 Sobic003G300000--Sobic003G092300 Sobic003G300000--Sobic002G078900 Sobic003G300000--Sobic009G063700 Sobic009G075500 Sobic009G075500 Sobic003G300000--Sobic009G075500 Sobic003G300000--Sobic006G271600 Sobic003G300000--Sobic004G281000 Sobic001G419500 Sobic001G419500 Sobic003G300000--Sobic001G419500 Sobic003G092300--Sobic001G459400 Sobic003G092300--Sobic010G183800 Sobic003G092300--Sobic001G459300 Sobic003G092300--Sobic001G106500 Sobic003G092300--Sobic003G300000 Sobic003G092300--Sobic010G048600 Sobic003G092300--Sobic009G075500 Sobic003G092300--Sobic001G158100 Sobic003G092300--Sobic005G070700 Sobic001G456000--Sobic002G078900 Sobic001G456000--Sobic010G183800 Sobic001G456000--Sobic001G459300 Sobic001G456000--Sobic010G048600 Sobic001G456000--Sobic001G459400 Sobic001G456000--Sobic001G106500 Sobic001G456000--Sobic005G070700 Sobic003G243100 Sobic003G243100 Sobic001G456000--Sobic003G243100 Sobic004G277700 Sobic004G277700 Sobic001G456000--Sobic004G277700 Sobic001G459400--Sobic003G092300 Sobic001G459400--Sobic001G459300 Sobic001G459400--Sobic005G070700 Sobic001G459400--Sobic010G183800 Sobic001G459400--Sobic010G048600 Sobic001G459400--Sobic009G075500 Sobic001G459400--Sobic002G078900 Sobic001G459400--Sobic009G063700 Sobic006G015100 Sobic006G015100 Sobic001G459400--Sobic006G015100
Octagon: transcription factors


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