Gene annotation
Transcriptome id Sobic.010G070900.2
Synonym Sb10g006190, PDF1
Functional annotation keratin, type I cytoskeletal 9, putative, expressed
UniProt A0A1W0VRU8
Pfam -
Panther DB PTHR33210 PTHR33210:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42840 : protodermal factor 1
RAP-DB (Rice) LOC_Os01g10490.1 : keratin, type I cytoskeletal 9, putative, expressed
MaizeGDB (Corn) Zm00025a042426 , Zm00025a022982
Brachypodium -
Barley HORVU3Hr1G026690.5 , HORVU3Hr1G026690.1 , HORVU3Hr1G026690.2
Wheat TraesCS3B02G157800 , TraesCS3D02G140300
Populus -


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cDNA sequences
Sobic.010G070900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G147200 OsSub56 - Putative Subtilisin homologue, expressed -
2 Sobic.002G360600 expressed protein -
3 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
4 Sobic.006G163300 aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
5 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.002G426000 - -
7 Sobic.007G033700 OsFBX309 - F-box domain containing protein, expressed -
8 Sobic.010G168700 GDSL-like lipase/acylhydrolase, putative, expressed -
9 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
10 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
11 Sobic.004G237000 down-regulated TF in developmental senescence(PubMedID : 27586543)@"PGL2(Ortholog in rice:Heang and Sassa, 2012b(PubMedID : 31659886)@helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.001G101900 SCP-like extracellular protein, expressed -
13 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -
14 Sobic.010G014500 aspartic protease, putative, expressed -
15 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
16 Sobic.005G199700 leucine-rich repeat family protein, putative, expressed -
17 Sobic.002G430700 glycosyltransferase family 43 protein, putative, expressed -
18 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
19 Sobic.003G338700 LTPL16 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.003G316601 - -


Gene co-expression network
sample Sobic010G070900 Sobic010G070900 Sobic007G147200 Sobic007G147200 Sobic010G070900--Sobic007G147200 Sobic002G360600 Sobic002G360600 Sobic010G070900--Sobic002G360600 Sobic003G046400 Sobic003G046400 Sobic010G070900--Sobic003G046400 Sobic006G163300 Sobic006G163300 Sobic010G070900--Sobic006G163300 Sobic006G107500 Sobic006G107500 Sobic010G070900--Sobic006G107500 Sobic002G426000 Sobic002G426000 Sobic010G070900--Sobic002G426000 Sobic007G033700 Sobic007G033700 Sobic010G070900--Sobic007G033700 Sobic010G168700 Sobic010G168700 Sobic010G070900--Sobic010G168700 Sobic001G143400 Sobic001G143400 Sobic010G070900--Sobic001G143400 Sobic007G147200--Sobic010G070900 Sobic010G255000 Sobic010G255000 Sobic007G147200--Sobic010G255000 Sobic004G003700 Sobic004G003700 Sobic007G147200--Sobic004G003700 Sobic007G147200--Sobic003G046400 Sobic007G147200--Sobic006G163300 Sobic007G147200--Sobic001G143400 Sobic003G019900 Sobic003G019900 Sobic007G147200--Sobic003G019900 Sobic007G147200--Sobic006G107500 Sobic001G101700 Sobic001G101700 Sobic007G147200--Sobic001G101700 Sobic002G360600--Sobic006G107500 Sobic002G360600--Sobic006G163300 Sobic010G087600 Sobic010G087600 Sobic002G360600--Sobic010G087600 Sobic002G360600--Sobic010G070900 Sobic003G010700 Sobic003G010700 Sobic002G360600--Sobic003G010700 Sobic003G085900 Sobic003G085900 Sobic002G360600--Sobic003G085900 Sobic009G146700 Sobic009G146700 Sobic002G360600--Sobic009G146700 Sobic003G338700 Sobic003G338700 Sobic002G360600--Sobic003G338700 Sobic002G360600--Sobic003G046400 Sobic001G455900 Sobic001G455900 Sobic003G046400--Sobic001G455900 Sobic001G071600 Sobic001G071600 Sobic003G046400--Sobic001G071600 Sobic003G046400--Sobic007G033700 Sobic001G106500 Sobic001G106500 Sobic003G046400--Sobic001G106500 Sobic006G271600 Sobic006G271600 Sobic003G046400--Sobic006G271600 Sobic010G183800 Sobic010G183800 Sobic003G046400--Sobic010G183800 Sobic003G046400--Sobic006G163300 Sobic003G046400--Sobic010G070900 Sobic009G048300 Sobic009G048300 Sobic003G046400--Sobic009G048300 Sobic006G163300--Sobic002G360600 Sobic006G163300--Sobic001G455900 Sobic006G163300--Sobic003G046400 Sobic006G163300--Sobic003G010700 Sobic006G163300--Sobic010G070900 Sobic006G163300--Sobic007G147200 Sobic006G163300--Sobic007G033700 Sobic006G163300--Sobic006G107500 Sobic001G101900 Sobic001G101900 Sobic006G163300--Sobic001G101900 Sobic006G107500--Sobic002G360600 Sobic006G107500--Sobic010G070900 Sobic006G107500--Sobic010G087600 Sobic006G107500--Sobic003G085900 Sobic006G107500--Sobic006G163300 Sobic006G107500--Sobic009G146700 Sobic006G107500--Sobic007G147200 Sobic002G430700 Sobic002G430700 Sobic006G107500--Sobic002G430700 Sobic006G107500--Sobic003G338700 Sobic002G268300 Sobic002G268300 Sobic002G426000--Sobic002G268300 Sobic004G000800 Sobic004G000800 Sobic002G426000--Sobic004G000800 Sobic002G426000--Sobic010G070900 Sobic010G220800 Sobic010G220800 Sobic002G426000--Sobic010G220800 Sobic002G426000--Sobic010G168700 Sobic007G121200 Sobic007G121200 Sobic002G426000--Sobic007G121200 Sobic002G426000--Sobic003G046400 Sobic004G237000 Sobic004G237000 Sobic002G426000--Sobic004G237000 Sobic002G426000--Sobic007G033700 Sobic007G033700--Sobic003G046400 Sobic009G243000 Sobic009G243000 Sobic007G033700--Sobic009G243000 Sobic001G137600 Sobic001G137600 Sobic007G033700--Sobic001G137600 Sobic007G033700--Sobic001G455900 Sobic007G033700--Sobic006G163300 Sobic007G033700--Sobic010G070900 Sobic007G033700--Sobic006G271600 Sobic007G033700--Sobic001G071600 Sobic007G033700--Sobic004G237000 Sobic009G047500 Sobic009G047500 Sobic010G168700--Sobic009G047500 Sobic010G168700--Sobic001G143400 Sobic005G168400 Sobic005G168400 Sobic010G168700--Sobic005G168400 Sobic010G168700--Sobic004G003700 Sobic010G168700--Sobic010G070900 Sobic005G199700 Sobic005G199700 Sobic010G168700--Sobic005G199700 Sobic010G276600 Sobic010G276600 Sobic010G168700--Sobic010G276600 Sobic010G168700--Sobic002G426000 Sobic006G273600 Sobic006G273600 Sobic010G168700--Sobic006G273600 Sobic001G143400--Sobic004G003700 Sobic001G143400--Sobic010G168700 Sobic001G143400--Sobic005G168400 Sobic001G143400--Sobic007G147200 Sobic001G143400--Sobic010G070900 Sobic001G143400--Sobic009G047500 Sobic001G143400--Sobic005G199700 Sobic008G138000 Sobic008G138000 Sobic001G143400--Sobic008G138000 Sobic007G209200 Sobic007G209200 Sobic001G143400--Sobic007G209200
Octagon: transcription factors


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