Gene annotation
Transcriptome id Sobic.009G219500.1,Sobic.009G219500.2
Synonym Sb09g027400, SDRA, IBR1
Functional annotation dehydrogenase/reductase SDR family member 2, putative, expressed
UniProt A0A1B6P9Y2 , C5YUZ2
Pfam PF00106 PF08659
Panther DB PTHR24322 PTHR24322:SF502
NCBI CDD KOG0725; Reductases with broad range of substrate specificities
KEGG Orthology K11147; dehydrogenase/reductase SDR family member 4
Gene Ontology GO:0016491; oxidoreductase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT4G05530 : indole-3-butyric acid response 1
RAP-DB (Rice) LOC_Os09g04730.1 : dehydrogenase/reductase SDR family member 2, putative, expressed
MaizeGDB (Corn) Zm00025a045690
Brachypodium KQK07357
Barley HORVU5Hr1G049670.3 , HORVU5Hr1G049670.2 , HORVU5Hr1G049670.1 , HORVU0Hr1G012410.6 , HORVU0Hr1G012410.4 , HORVU0Hr1G012410.5 , HORVU0Hr1G012410.2 , HORVU0Hr1G012410.3 , HORVU0Hr1G012410.1
Wheat TraesCS5B02G161900 , TraesCS5D02G169300 , TraesCS5A02G164400 , TraesCS5A02G164400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G219500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G088600 transcription factor X1, putative, expressed -
2 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
3 Sobic.004G101200 meiosis 5, putative, expressed -
4 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
5 Sobic.001G137800 ankyrin, putative, expressed -
6 Sobic.003G129200 argonaute, putative, expressed -
7 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
8 Sobic.008G137700 XH domain containing protein, expressed -
9 Sobic.003G117200 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
10 Sobic.002G053350 - -
11 Sobic.001G137600 ankyrin, putative, expressed -
12 Sobic.007G128200 expressed protein -
13 Sobic.003G090600 seven in absentia protein family protein, putative, expressed -
14 Sobic.006G112300 RNA recognition motif family protein, expressed -
15 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
16 Sobic.001G419500 DnaK family protein, putative, expressed K03283: heat shock 70kDa protein 1/2/6/8
17 Sobic.003G300000 expressed protein -
18 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
19 Sobic.001G137500 ankyrin, putative, expressed -
20 Sobic.003G006000 expressed protein -


Gene co-expression network
sample Sobic009G219500 Sobic009G219500 Sobic003G088600 Sobic003G088600 Sobic009G219500--Sobic003G088600 Sobic006G271600 Sobic006G271600 Sobic009G219500--Sobic006G271600 Sobic004G101200 Sobic004G101200 Sobic009G219500--Sobic004G101200 Sobic010G194600 Sobic010G194600 Sobic009G219500--Sobic010G194600 Sobic001G137800 Sobic001G137800 Sobic009G219500--Sobic001G137800 Sobic003G129200 Sobic003G129200 Sobic009G219500--Sobic003G129200 Sobic001G086400 Sobic001G086400 Sobic009G219500--Sobic001G086400 Sobic008G137700 Sobic008G137700 Sobic009G219500--Sobic008G137700 Sobic003G117200 Sobic003G117200 Sobic009G219500--Sobic003G117200 Sobic003G088600--Sobic008G137700 Sobic001G137500 Sobic001G137500 Sobic003G088600--Sobic001G137500 Sobic002G053350 Sobic002G053350 Sobic003G088600--Sobic002G053350 Sobic001G419500 Sobic001G419500 Sobic003G088600--Sobic001G419500 Sobic003G088600--Sobic010G194600 Sobic003G088600--Sobic006G271600 Sobic003G006000 Sobic003G006000 Sobic003G088600--Sobic003G006000 Sobic003G088600--Sobic009G219500 Sobic002G178700 Sobic002G178700 Sobic003G088600--Sobic002G178700 Sobic001G071600 Sobic001G071600 Sobic006G271600--Sobic001G071600 Sobic006G271600--Sobic010G194600 Sobic006G271600--Sobic003G117200 Sobic009G243000 Sobic009G243000 Sobic006G271600--Sobic009G243000 Sobic003G300000 Sobic003G300000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic006G271600--Sobic003G088600 Sobic004G101200--Sobic009G219500 Sobic006G111100 Sobic006G111100 Sobic004G101200--Sobic006G111100 Sobic004G101200--Sobic001G137800 Sobic001G235200 Sobic001G235200 Sobic004G101200--Sobic001G235200 Sobic006G213900 Sobic006G213900 Sobic004G101200--Sobic006G213900 Sobic003G374100 Sobic003G374100 Sobic004G101200--Sobic003G374100 Sobic002G076600 Sobic002G076600 Sobic004G101200--Sobic002G076600 Sobic001G235100 Sobic001G235100 Sobic004G101200--Sobic001G235100 Sobic004G101200--Sobic003G129200 Sobic001G457600 Sobic001G457600 Sobic010G194600--Sobic001G457600 Sobic010G194600--Sobic006G271600 Sobic007G128200 Sobic007G128200 Sobic010G194600--Sobic007G128200 Sobic010G194600--Sobic001G137500 Sobic010G194600--Sobic001G419500 Sobic010G194600--Sobic003G088600 Sobic004G234600 Sobic004G234600 Sobic010G194600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic010G194600--Sobic009G063700 Sobic010G194600--Sobic003G300000 Sobic006G228000 Sobic006G228000 Sobic001G137800--Sobic006G228000 Sobic001G137800--Sobic001G235200 Sobic001G137800--Sobic003G374100 Sobic007G043000 Sobic007G043000 Sobic001G137800--Sobic007G043000 Sobic002G121900 Sobic002G121900 Sobic001G137800--Sobic002G121900 Sobic001G137800--Sobic001G235100 Sobic001G137800--Sobic006G213900 Sobic001G216400 Sobic001G216400 Sobic001G137800--Sobic001G216400 Sobic001G137800--Sobic007G128200 Sobic003G129200--Sobic003G374100 Sobic003G129200--Sobic004G234600 Sobic003G129200--Sobic008G137700 Sobic003G129200--Sobic001G137800 Sobic003G129200--Sobic003G088600 Sobic003G129200--Sobic002G053350 Sobic002G239101 Sobic002G239101 Sobic003G129200--Sobic002G239101 Sobic003G295100 Sobic003G295100 Sobic003G129200--Sobic003G295100 Sobic003G129200--Sobic001G235200 Sobic002G263000 Sobic002G263000 Sobic001G086400--Sobic002G263000 Sobic003G207000 Sobic003G207000 Sobic001G086400--Sobic003G207000 Sobic001G086400--Sobic001G137800 Sobic001G086400--Sobic010G194600 Sobic001G137400 Sobic001G137400 Sobic001G086400--Sobic001G137400 Sobic001G086400--Sobic002G121900 Sobic001G086400--Sobic002G053350 Sobic001G086400--Sobic007G128200 Sobic001G171200 Sobic001G171200 Sobic001G086400--Sobic001G171200 Sobic008G137700--Sobic003G088600 Sobic008G137700--Sobic002G053350 Sobic008G137700--Sobic001G419500 Sobic008G137700--Sobic002G178700 Sobic008G137700--Sobic001G137500 Sobic008G137700--Sobic003G300000 Sobic008G137700--Sobic004G234600 Sobic008G137700--Sobic010G194600 Sobic008G137700--Sobic003G006000 Sobic003G117200--Sobic006G271600 Sobic003G117200--Sobic002G078900 Sobic003G117200--Sobic010G183800 Sobic003G117200--Sobic003G046400 Sobic003G117200--Sobic003G300000 Sobic003G117200--Sobic001G071600 Sobic003G117200--Sobic009G243000 Sobic003G117200--Sobic003G006000 Sobic009G048300 Sobic009G048300 Sobic003G117200--Sobic009G048300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.