Gene annotation
Transcriptome id Sobic.004G101200.1
Synonym PDF1, Sb04g008270
Functional annotation meiosis 5, putative, expressed
UniProt C5XYK0
Pfam -
Panther DB PTHR33210 PTHR33210:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G42840 : protodermal factor 1
RAP-DB (Rice) LOC_Os02g13660.1 : meiosis 5, putative, expressed
MaizeGDB (Corn) Zm00025a020094
Brachypodium KQJ94142
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G219500 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
2 Sobic.006G111100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@pathogenesis-related Bet v I family protein, putative, expressed -
3 Sobic.001G137800 ankyrin, putative, expressed -
4 Sobic.001G235200 MYB family transcription factor, putative, expressed -
5 Sobic.006G213900 OsMADS31 - MADS-box family gene with MIKCc type-box, expressed -
6 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
7 Sobic.002G076600 rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed -
8 Sobic.001G235100 MYB family transcription factor, putative, expressed -
9 Sobic.003G129200 argonaute, putative, expressed -
10 Sobic.003G295100 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.001G152901 "YABBY transcription factor, "(PubMedID : 22581231) -
12 Sobic.006G163200 COBRA, putative, expressed -
13 Sobic.005G070800 - -
14 Sobic.003G088600 transcription factor X1, putative, expressed -
15 Sobic.002G027100 ZOS1-07 - C2H2 zinc finger protein, expressed -
16 Sobic.003G308100 CSLC1 - cellulose synthase-like family C, expressed -
17 Sobic.003G274000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.002G239101 - -
20 Sobic.003G063700 - -


Gene co-expression network
sample Sobic004G101200 Sobic004G101200 Sobic009G219500 Sobic009G219500 Sobic004G101200--Sobic009G219500 Sobic006G111100 Sobic006G111100 Sobic004G101200--Sobic006G111100 Sobic001G137800 Sobic001G137800 Sobic004G101200--Sobic001G137800 Sobic001G235200 Sobic001G235200 Sobic004G101200--Sobic001G235200 Sobic006G213900 Sobic006G213900 Sobic004G101200--Sobic006G213900 Sobic003G374100 Sobic003G374100 Sobic004G101200--Sobic003G374100 Sobic002G076600 Sobic002G076600 Sobic004G101200--Sobic002G076600 Sobic001G235100 Sobic001G235100 Sobic004G101200--Sobic001G235100 Sobic003G129200 Sobic003G129200 Sobic004G101200--Sobic003G129200 Sobic003G088600 Sobic003G088600 Sobic009G219500--Sobic003G088600 Sobic006G271600 Sobic006G271600 Sobic009G219500--Sobic006G271600 Sobic009G219500--Sobic004G101200 Sobic010G194600 Sobic010G194600 Sobic009G219500--Sobic010G194600 Sobic009G219500--Sobic001G137800 Sobic009G219500--Sobic003G129200 Sobic001G086400 Sobic001G086400 Sobic009G219500--Sobic001G086400 Sobic008G137700 Sobic008G137700 Sobic009G219500--Sobic008G137700 Sobic003G117200 Sobic003G117200 Sobic009G219500--Sobic003G117200 Sobic006G111100--Sobic003G374100 Sobic003G274000 Sobic003G274000 Sobic006G111100--Sobic003G274000 Sobic002G121900 Sobic002G121900 Sobic006G111100--Sobic002G121900 Sobic010G156100 Sobic010G156100 Sobic006G111100--Sobic010G156100 Sobic006G111100--Sobic004G101200 Sobic004G072900 Sobic004G072900 Sobic006G111100--Sobic004G072900 Sobic001G152901 Sobic001G152901 Sobic006G111100--Sobic001G152901 Sobic001G287900 Sobic001G287900 Sobic006G111100--Sobic001G287900 Sobic006G111100--Sobic001G137800 Sobic006G228000 Sobic006G228000 Sobic001G137800--Sobic006G228000 Sobic001G137800--Sobic001G235200 Sobic001G137800--Sobic003G374100 Sobic007G043000 Sobic007G043000 Sobic001G137800--Sobic007G043000 Sobic001G137800--Sobic002G121900 Sobic001G137800--Sobic001G235100 Sobic001G137800--Sobic006G213900 Sobic001G216400 Sobic001G216400 Sobic001G137800--Sobic001G216400 Sobic007G128200 Sobic007G128200 Sobic001G137800--Sobic007G128200 Sobic001G235200--Sobic006G213900 Sobic003G063700 Sobic003G063700 Sobic001G235200--Sobic003G063700 Sobic006G134700 Sobic006G134700 Sobic001G235200--Sobic006G134700 Sobic002G239101 Sobic002G239101 Sobic001G235200--Sobic002G239101 Sobic001G235200--Sobic001G137800 Sobic002G159000 Sobic002G159000 Sobic001G235200--Sobic002G159000 Sobic004G168000 Sobic004G168000 Sobic001G235200--Sobic004G168000 Sobic005G070101 Sobic005G070101 Sobic001G235200--Sobic005G070101 Sobic009G211300 Sobic009G211300 Sobic001G235200--Sobic009G211300 Sobic006G213900--Sobic001G235200 Sobic006G213900--Sobic002G239101 Sobic006G213900--Sobic006G134700 Sobic006G213900--Sobic002G159000 Sobic006G213900--Sobic004G168000 Sobic006G213900--Sobic005G070101 Sobic006G213900--Sobic001G216400 Sobic009G075500 Sobic009G075500 Sobic006G213900--Sobic009G075500 Sobic006G213900--Sobic003G063700 Sobic003G374100--Sobic001G137800 Sobic003G374100--Sobic006G228000 Sobic003G374100--Sobic003G129200 Sobic003G374100--Sobic007G043000 Sobic003G374100--Sobic002G121900 Sobic004G234600 Sobic004G234600 Sobic003G374100--Sobic004G234600 Sobic002G053350 Sobic002G053350 Sobic003G374100--Sobic002G053350 Sobic003G374100--Sobic001G235200 Sobic003G374100--Sobic001G235100 Sobic004G014700 Sobic004G014700 Sobic002G076600--Sobic004G014700 Sobic008G123350 Sobic008G123350 Sobic002G076600--Sobic008G123350 Sobic006G189500 Sobic006G189500 Sobic002G076600--Sobic006G189500 Sobic006G131100 Sobic006G131100 Sobic002G076600--Sobic006G131100 Sobic005G070800 Sobic005G070800 Sobic002G076600--Sobic005G070800 Sobic004G195400 Sobic004G195400 Sobic002G076600--Sobic004G195400 Sobic005G190300 Sobic005G190300 Sobic002G076600--Sobic005G190300 Sobic008G048600 Sobic008G048600 Sobic002G076600--Sobic008G048600 Sobic006G163200 Sobic006G163200 Sobic002G076600--Sobic006G163200 Sobic001G235100--Sobic007G043000 Sobic004G254100 Sobic004G254100 Sobic001G235100--Sobic004G254100 Sobic008G138200 Sobic008G138200 Sobic001G235100--Sobic008G138200 Sobic001G235100--Sobic002G121900 Sobic001G235100--Sobic001G137800 Sobic001G235100--Sobic006G213900 Sobic001G235100--Sobic001G235200 Sobic001G235100--Sobic003G063700 Sobic001G235100--Sobic001G216400 Sobic003G129200--Sobic003G374100 Sobic003G129200--Sobic004G234600 Sobic003G129200--Sobic008G137700 Sobic003G129200--Sobic001G137800 Sobic003G129200--Sobic003G088600 Sobic003G129200--Sobic002G053350 Sobic003G129200--Sobic002G239101 Sobic003G295100 Sobic003G295100 Sobic003G129200--Sobic003G295100 Sobic003G129200--Sobic001G235200
Octagon: transcription factors


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