Gene annotation
Transcriptome id Sobic.001G152901.1
Synonym Sh1, Shattering1
Functional annotation "YABBY transcription factor, " (PubMedID : 22581231)
UniProt A0A1Z5S5P8
Pfam PF09011
Panther DB PTHR31675 PTHR31675:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development


Orthologs (automatic annotation)
TAIR AT2G45190 : Plant-specific transcription factor YABBY family protein
RAP-DB (Rice) LOC_Os03g44710.2 : YABBY domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017236
Brachypodium KQK13957 , KQK13956 , KQK13955 , KQK13954 , KQK13953 , KQK13952 , PNT74381
Barley HORVU5Hr1G092430.1 , HORVU5Hr1G092430.3 , HORVU5Hr1G092430.2 , HORVU5Hr1G092430.5 , HORVU5Hr1G092430.4 , HORVU5Hr1G092430.7 , HORVU5Hr1G092430.6 , HORVU5Hr1G092430.11 , HORVU5Hr1G092430.10
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G217800 expressed protein -
2 Sobic.002G076600 rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed -
3 Sobic.004G014700 THION20 - Plant thionin family protein precursor, putative, expressed -
4 Sobic.008G138200 RNA recognition motif family protein, expressed -
5 Sobic.006G163200 COBRA, putative, expressed -
6 Sobic.001G287900 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
7 Sobic.006G131100 - -
8 Sobic.006G189500 OsMADS17 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
9 Sobic.005G070800 - -
10 Sobic.004G195400 heavy metal associated domain containing protein, expressed -
11 Sobic.008G123350 - -
12 Sobic.003G274000 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.008G048600 - -
14 Sobic.007G043000 transcription factor X1, putative, expressed -
15 Sobic.003G411100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
16 Sobic.001G235100 MYB family transcription factor, putative, expressed -
17 Sobic.001G235200 MYB family transcription factor, putative, expressed -
18 Sobic.002G121900 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.001G137800 ankyrin, putative, expressed -
20 Sobic.004G072900 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic001G152901 Sobic001G152901 Sobic007G217800 Sobic007G217800 Sobic001G152901--Sobic007G217800 Sobic002G076600 Sobic002G076600 Sobic001G152901--Sobic002G076600 Sobic004G014700 Sobic004G014700 Sobic001G152901--Sobic004G014700 Sobic008G138200 Sobic008G138200 Sobic001G152901--Sobic008G138200 Sobic006G163200 Sobic006G163200 Sobic001G152901--Sobic006G163200 Sobic001G287900 Sobic001G287900 Sobic001G152901--Sobic001G287900 Sobic006G131100 Sobic006G131100 Sobic001G152901--Sobic006G131100 Sobic006G189500 Sobic006G189500 Sobic001G152901--Sobic006G189500 Sobic005G070800 Sobic005G070800 Sobic001G152901--Sobic005G070800 Sobic007G217800--Sobic001G152901 Sobic007G217800--Sobic001G287900 Sobic007G217800--Sobic004G014700 Sobic007G217800--Sobic006G189500 Sobic007G217800--Sobic002G076600 Sobic004G195400 Sobic004G195400 Sobic007G217800--Sobic004G195400 Sobic007G217800--Sobic008G138200 Sobic007G217800--Sobic006G163200 Sobic003G063700 Sobic003G063700 Sobic007G217800--Sobic003G063700 Sobic002G076600--Sobic004G014700 Sobic008G123350 Sobic008G123350 Sobic002G076600--Sobic008G123350 Sobic002G076600--Sobic006G189500 Sobic002G076600--Sobic006G131100 Sobic002G076600--Sobic005G070800 Sobic002G076600--Sobic004G195400 Sobic005G190300 Sobic005G190300 Sobic002G076600--Sobic005G190300 Sobic008G048600 Sobic008G048600 Sobic002G076600--Sobic008G048600 Sobic002G076600--Sobic006G163200 Sobic004G014700--Sobic008G048600 Sobic004G014700--Sobic004G195400 Sobic004G014700--Sobic006G189500 Sobic003G411100 Sobic003G411100 Sobic004G014700--Sobic003G411100 Sobic004G014700--Sobic006G131100 Sobic004G014700--Sobic002G076600 Sobic004G014700--Sobic008G123350 Sobic006G006100 Sobic006G006100 Sobic004G014700--Sobic006G006100 Sobic005G064400 Sobic005G064400 Sobic004G014700--Sobic005G064400 Sobic007G043000 Sobic007G043000 Sobic008G138200--Sobic007G043000 Sobic001G235100 Sobic001G235100 Sobic008G138200--Sobic001G235100 Sobic004G254100 Sobic004G254100 Sobic008G138200--Sobic004G254100 Sobic008G138200--Sobic001G287900 Sobic001G141900 Sobic001G141900 Sobic008G138200--Sobic001G141900 Sobic008G138200--Sobic003G063700 Sobic003G044800 Sobic003G044800 Sobic008G138200--Sobic003G044800 Sobic008G138200--Sobic001G152901 Sobic001G235200 Sobic001G235200 Sobic008G138200--Sobic001G235200 Sobic006G163200--Sobic005G070800 Sobic006G163200--Sobic002G076600 Sobic006G163200--Sobic001G235200 Sobic006G163200--Sobic004G195400 Sobic008G143300 Sobic008G143300 Sobic006G163200--Sobic008G143300 Sobic006G163200--Sobic006G189500 Sobic006G213900 Sobic006G213900 Sobic006G163200--Sobic006G213900 Sobic006G163200--Sobic004G014700 Sobic006G163200--Sobic001G152901 Sobic010G118900 Sobic010G118900 Sobic001G287900--Sobic010G118900 Sobic001G287900--Sobic007G217800 Sobic002G121900 Sobic002G121900 Sobic001G287900--Sobic002G121900 Sobic001G287900--Sobic008G138200 Sobic008G031000 Sobic008G031000 Sobic001G287900--Sobic008G031000 Sobic003G274000 Sobic003G274000 Sobic001G287900--Sobic003G274000 Sobic001G287900--Sobic001G152901 Sobic001G287900--Sobic003G044800 Sobic001G287900--Sobic007G043000 Sobic006G131100--Sobic004G014700 Sobic006G131100--Sobic008G048600 Sobic006G131100--Sobic006G189500 Sobic006G131100--Sobic004G195400 Sobic006G131100--Sobic003G411100 Sobic006G131100--Sobic002G076600 Sobic006G144101 Sobic006G144101 Sobic006G131100--Sobic006G144101 Sobic006G131100--Sobic006G006100 Sobic006G131100--Sobic005G064400 Sobic006G189500--Sobic004G195400 Sobic006G189500--Sobic004G014700 Sobic006G189500--Sobic008G048600 Sobic006G189500--Sobic006G131100 Sobic006G189500--Sobic002G076600 Sobic006G189500--Sobic003G411100 Sobic006G189500--Sobic008G123350 Sobic006G189500--Sobic006G006100 Sobic006G189500--Sobic005G064400 Sobic005G070800--Sobic006G163200 Sobic005G070800--Sobic002G076600 Sobic005G070800--Sobic008G123350 Sobic005G070800--Sobic005G190300 Sobic005G070800--Sobic008G143300 Sobic005G070800--Sobic006G189500 Sobic005G070800--Sobic004G014700 Sobic005G070800--Sobic004G195400 Sobic010G121800 Sobic010G121800 Sobic005G070800--Sobic010G121800
Octagon: transcription factors


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