Gene annotation
Transcriptome id Sobic.006G189500.1
Synonym AGL6, Sb06g026300
Functional annotation OsMADS17 - MADS-box family gene with MIKCc type-box, expressed
UniProt A0A1B6PMU4
Pfam PF00319 PF01486
Panther DB PTHR11945 PTHR11945:SF189
NCBI CDD KOG0014; MADS box transcription factor
KEGG Orthology K09264; MADS-box transcription factor, plant
Gene Ontology GO:0003677; DNA binding GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT2G45650 : AGAMOUS-like 6
RAP-DB (Rice) LOC_Os04g49150.1 : OsMADS17 - MADS-box family gene with MIKCc type-box, expressed
MaizeGDB (Corn) Zm00025a021527 , Zm00025a032331 , Zm00025a001297 , Zm00025a049936 , Zm00025a047585 , Zm00025a043140 , Zm00025a005260 , Zm00025a005261 , Zm00025a053064 , Zm00025a008189 , Zm00025a014307 , Zm00025a016785 , Zm00025a022983 , Zm00025a048701
Brachypodium PNT65319 , KQK03213 , PNT65321 , KQK03211 , KQK03210 , KQK03212 , KQK19480 , KQK13150 , KQK00790 , KQJ91889 , PNT65320 , KQJ90931
Barley HORVU0Hr1G032300.5 , HORVU6Hr1G066140.9 , HORVU6Hr1G066140.8 , HORVU6Hr1G066140.1 , HORVU6Hr1G066140.3 , HORVU6Hr1G066140.2 , HORVU6Hr1G066140.5 , HORVU6Hr1G066140.4 , HORVU6Hr1G066140.7 , HORVU6Hr1G066140.6 , HORVU1Hr1G023620.12 , HORVU1Hr1G023620.13 , HORVU1Hr1G023620.11 , HORVU1Hr1G023620.16 , HORVU1Hr1G023620.14 , HORVU1Hr1G023620.15 , HORVU0Hr1G032300.7 , HORVU1Hr1G023620.1 , HORVU1Hr1G023620.2 , HORVU1Hr1G023620.4 , HORVU5Hr1G095630.6 , HORVU5Hr1G095630.7 , HORVU5Hr1G095630.2 , HORVU5Hr1G095630.3 , HORVU5Hr1G095630.1 , HORVU5Hr1G095630.8 , HORVU5Hr1G095630.9 , HORVU0Hr1G032300.4 , HORVU0Hr1G032300.6 , HORVU0Hr1G032300.1 , HORVU0Hr1G032300.2 , HORVU0Hr1G032300.3 , HORVU5Hr1G076400.4 , HORVU5Hr1G076400.5 , HORVU5Hr1G076400.2 , HORVU5Hr1G076400.3 , HORVU5Hr1G076400.1 , HORVU1Hr1G023620.8 , HORVU1Hr1G023620.9 , HORVU1Hr1G023620.3 , HORVU1Hr1G023620.5 , HORVU7Hr1G054220.4 , HORVU7Hr1G054220.5 , HORVU7Hr1G054220.1 , HORVU7Hr1G054220.2 , HORVU7Hr1G054220.3
Wheat TraesCS5A02G117500 , TraesCS5A02G117500 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS6B02G286400 , TraesCS1D02G203300 , TraesCS1D02G203300 , TraesCS7D02G261600 , TraesCS5D02G294500 , TraesCS5A02G286800 , TraesCS7A02G260900 , TraesCS7B02G158600 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS5D02G401500 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS6D02G240200 , TraesCS5D02G118200 , TraesCS5D02G118200 , TraesCS1D02G127700 , TraesCS1D02G127700 , TraesCS1B02G144800 , TraesCS1B02G144800 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS6A02G259000 , TraesCS5A02G391700 , TraesCS5A02G391700 , TraesCS5B02G396600 , TraesCS5B02G396600 , TraesCS7D02G261600 , TraesCS5B02G115100 , TraesCS5B02G115100 , TraesCS7A02G260600 , TraesCS7A02G260600 , TraesCS7D02G261900 , TraesCS1A02G125800 , TraesCS1A02G125800 , TraesCS1A02G199600 , TraesCS1A02G199600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G189500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G195400 heavy metal associated domain containing protein, expressed -
2 Sobic.004G014700 THION20 - Plant thionin family protein precursor, putative, expressed -
3 Sobic.008G048600 - -
4 Sobic.006G131100 - -
5 Sobic.002G076600 rc - bHLH transcription factor regulating proanthocyanidin production in seeds, expressed -
6 Sobic.003G411100 transferase family protein, putative, expressed K15400: omega-hydroxypalmitate O-feruloyl transferase
7 Sobic.008G123350 - -
8 Sobic.006G006100 expressed protein -
9 Sobic.005G064400 eukaryotic aspartyl protease domain containing protein, expressed -
10 Sobic.006G006000 expressed protein -
11 Sobic.004G309200 alpha-amylase precursor, putative, expressed K01176: AMY, amyA, alpha-amylase
12 Sobic.005G190300 - -
13 Sobic.006G194900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
14 Sobic.004G316400 - -
15 Sobic.006G007001 - -
16 Sobic.010G129300 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
17 Sobic.006G144101 - -
18 Sobic.005G081800 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
19 Sobic.002G352401 - -
20 Sobic.002G095000 DEFL72 - Defensin and Defensin-like DEFL family -


Gene co-expression network
sample Sobic006G189500 Sobic006G189500 Sobic004G195400 Sobic004G195400 Sobic006G189500--Sobic004G195400 Sobic004G014700 Sobic004G014700 Sobic006G189500--Sobic004G014700 Sobic008G048600 Sobic008G048600 Sobic006G189500--Sobic008G048600 Sobic006G131100 Sobic006G131100 Sobic006G189500--Sobic006G131100 Sobic002G076600 Sobic002G076600 Sobic006G189500--Sobic002G076600 Sobic003G411100 Sobic003G411100 Sobic006G189500--Sobic003G411100 Sobic008G123350 Sobic008G123350 Sobic006G189500--Sobic008G123350 Sobic006G006100 Sobic006G006100 Sobic006G189500--Sobic006G006100 Sobic005G064400 Sobic005G064400 Sobic006G189500--Sobic005G064400 Sobic004G195400--Sobic004G014700 Sobic004G195400--Sobic008G048600 Sobic004G195400--Sobic006G189500 Sobic004G195400--Sobic003G411100 Sobic004G195400--Sobic006G131100 Sobic004G195400--Sobic002G076600 Sobic001G324600 Sobic001G324600 Sobic004G195400--Sobic001G324600 Sobic004G195400--Sobic006G006100 Sobic006G144101 Sobic006G144101 Sobic004G195400--Sobic006G144101 Sobic004G014700--Sobic008G048600 Sobic004G014700--Sobic004G195400 Sobic004G014700--Sobic006G189500 Sobic004G014700--Sobic003G411100 Sobic004G014700--Sobic006G131100 Sobic004G014700--Sobic002G076600 Sobic004G014700--Sobic008G123350 Sobic004G014700--Sobic006G006100 Sobic004G014700--Sobic005G064400 Sobic008G048600--Sobic003G411100 Sobic008G048600--Sobic004G014700 Sobic008G048600--Sobic004G195400 Sobic008G048600--Sobic006G144101 Sobic008G048600--Sobic006G189500 Sobic008G048600--Sobic006G131100 Sobic002G345500 Sobic002G345500 Sobic008G048600--Sobic002G345500 Sobic005G179700 Sobic005G179700 Sobic008G048600--Sobic005G179700 Sobic005G200400 Sobic005G200400 Sobic008G048600--Sobic005G200400 Sobic006G131100--Sobic004G014700 Sobic006G131100--Sobic008G048600 Sobic006G131100--Sobic006G189500 Sobic006G131100--Sobic004G195400 Sobic006G131100--Sobic003G411100 Sobic006G131100--Sobic002G076600 Sobic006G131100--Sobic006G144101 Sobic006G131100--Sobic006G006100 Sobic006G131100--Sobic005G064400 Sobic002G076600--Sobic004G014700 Sobic002G076600--Sobic008G123350 Sobic002G076600--Sobic006G189500 Sobic002G076600--Sobic006G131100 Sobic005G070800 Sobic005G070800 Sobic002G076600--Sobic005G070800 Sobic002G076600--Sobic004G195400 Sobic005G190300 Sobic005G190300 Sobic002G076600--Sobic005G190300 Sobic002G076600--Sobic008G048600 Sobic006G163200 Sobic006G163200 Sobic002G076600--Sobic006G163200 Sobic003G411100--Sobic006G144101 Sobic003G411100--Sobic008G048600 Sobic003G411100--Sobic002G345500 Sobic004G090400 Sobic004G090400 Sobic003G411100--Sobic004G090400 Sobic003G411100--Sobic005G200400 Sobic002G352501 Sobic002G352501 Sobic003G411100--Sobic002G352501 Sobic003G411100--Sobic005G179700 Sobic002G162100 Sobic002G162100 Sobic003G411100--Sobic002G162100 Sobic003G411100--Sobic004G014700 Sobic008G123350--Sobic005G190300 Sobic010G121800 Sobic010G121800 Sobic008G123350--Sobic010G121800 Sobic001G200800 Sobic001G200800 Sobic008G123350--Sobic001G200800 Sobic002G332000 Sobic002G332000 Sobic008G123350--Sobic002G332000 Sobic008G143200 Sobic008G143200 Sobic008G123350--Sobic008G143200 Sobic002G103000 Sobic002G103000 Sobic008G123350--Sobic002G103000 Sobic007G040400 Sobic007G040400 Sobic008G123350--Sobic007G040400 Sobic005G147400 Sobic005G147400 Sobic008G123350--Sobic005G147400 Sobic005G196400 Sobic005G196400 Sobic008G123350--Sobic005G196400 Sobic006G006000 Sobic006G006000 Sobic006G006100--Sobic006G006000 Sobic005G081800 Sobic005G081800 Sobic006G006100--Sobic005G081800 Sobic010G129300 Sobic010G129300 Sobic006G006100--Sobic010G129300 Sobic006G007001 Sobic006G007001 Sobic006G006100--Sobic006G007001 Sobic002G095000 Sobic002G095000 Sobic006G006100--Sobic002G095000 Sobic004G029500 Sobic004G029500 Sobic006G006100--Sobic004G029500 Sobic006G006100--Sobic005G064400 Sobic002G058100 Sobic002G058100 Sobic006G006100--Sobic002G058100 Sobic010G191400 Sobic010G191400 Sobic006G006100--Sobic010G191400 Sobic005G064400--Sobic006G007001 Sobic005G064400--Sobic010G129300 Sobic005G064400--Sobic006G006100 Sobic005G064400--Sobic005G081800 Sobic002G352401 Sobic002G352401 Sobic005G064400--Sobic002G352401 Sobic005G064400--Sobic004G029500 Sobic005G064400--Sobic002G095000 Sobic004G316400 Sobic004G316400 Sobic005G064400--Sobic004G316400 Sobic005G064400--Sobic002G058100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.