Gene annotation
Transcriptome id Sobic.004G309200.1
Synonym Sb04g034150, AMY1, ATAMY1
Functional annotation alpha-amylase precursor, putative, expressed
UniProt C5XSV0
Pfam PF00128 PF07821
Panther DB PTHR10357 PTHR10357:SF148
NCBI CDD KOG0471; Alpha-amylase
KEGG Orthology K01176; AMY, amyA, alpha-amylase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0003824catalytic activity GO:0005509calcium ion binding GO:0004556alpha-amylase activity


Orthologs (automatic annotation)
TAIR AT4G25000 : alpha-amylase-like
RAP-DB (Rice) LOC_Os02g52710.1 : alpha-amylase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022221 , Zm00025a014064 , Zm00025a046841 , Zm00025a005424
Brachypodium KQJ90515 , KQK01755
Barley HORVU6Hr1G078330.2 , HORVU6Hr1G078420.1 , HORVU6Hr1G078360.2 , HORVU6Hr1G078360.3 , HORVU6Hr1G078360.1 , HORVU7Hr1G091240.1 , HORVU6Hr1G078330.1 , HORVU7Hr1G091250.8 , HORVU7Hr1G091250.2 , HORVU7Hr1G091250.3 , HORVU7Hr1G091250.1 , HORVU7Hr1G091250.6 , HORVU7Hr1G091250.7 , HORVU7Hr1G091250.4 , HORVU7Hr1G091250.5 , HORVU0Hr1G032700.1 , HORVU5Hr1G068350.1 , HORVU5Hr1G068350.2 , HORVU6Hr1G080790.1 , HORVU6Hr1G080790.2 , HORVU0Hr1G032850.1 , HORVU0Hr1G032850.2 , HORVU0Hr1G032850.3 , HORVU0Hr1G032850.4 , HORVU0Hr1G032850.5 , HORVU7Hr1G091150.1 , HORVU7Hr1G091150.2
Wheat TraesCS5A02G464500 , TraesCS5B02G476000 , TraesCS5D02G245000 , TraesCS6A02G319300 , TraesCS7A02G383200 , TraesCS4B02G285400 , TraesCS6D02G313300 , TraesCS5B02G475700 , TraesCS6B02G349700 , TraesCS6D02G313500 , TraesCS6A02G334100 , TraesCS7A02G384000 , TraesCS6B02G349800 , TraesCS7D02G379700 , TraesCS7B02G286700 , TraesCS6B02G364900 , TraesCS7A02G383900 , TraesCS6B02G364800 , TraesCS7D02G380400 , TraesCS7B02G286000 , TraesCS7D02G380500 , TraesCS6D02G298500 , TraesCS5B02G236600 , TraesCS6A02G334200 , TraesCS7B02G286100 , TraesCS6B02G349500 , TraesCS5A02G238100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G194900 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
2 Sobic.004G316400 - -
3 Sobic.005G064400 eukaryotic aspartyl protease domain containing protein, expressed -
4 Sobic.006G007001 - -
5 Sobic.010G129300 aspartic proteinase nepenthesin-2 precursor, putative, expressed -
6 Sobic.005G081800 LTPL33 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
7 Sobic.002G352401 - -
8 Sobic.002G352501 - -
9 Sobic.002G095000 DEFL72 - Defensin and Defensin-like DEFL family -
10 Sobic.004G029500 - -
11 Sobic.006G006100 expressed protein -
12 Sobic.008G188300 - -
13 Sobic.002G058100 thioredoxin, putative, expressed K03671: thioredoxin 1
14 Sobic.005G179700 OsMADS89 - MADS-box family gene with M-gamma type-box, expressed -
15 Sobic.010G191400 - -
16 Sobic.006G006000 expressed protein -
17 Sobic.005G027200 GDSL-like lipase/acylhydrolase, putative, expressed -
18 Sobic.005G027100 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.001G349600 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
20 Sobic.005G130900 expressed protein -


Gene co-expression network
sample Sobic004G309200 Sobic004G309200 Sobic006G194900 Sobic006G194900 Sobic004G309200--Sobic006G194900 Sobic004G316400 Sobic004G316400 Sobic004G309200--Sobic004G316400 Sobic005G064400 Sobic005G064400 Sobic004G309200--Sobic005G064400 Sobic006G007001 Sobic006G007001 Sobic004G309200--Sobic006G007001 Sobic010G129300 Sobic010G129300 Sobic004G309200--Sobic010G129300 Sobic005G081800 Sobic005G081800 Sobic004G309200--Sobic005G081800 Sobic002G352401 Sobic002G352401 Sobic004G309200--Sobic002G352401 Sobic002G352501 Sobic002G352501 Sobic004G309200--Sobic002G352501 Sobic002G095000 Sobic002G095000 Sobic004G309200--Sobic002G095000 Sobic006G194900--Sobic004G316400 Sobic006G194900--Sobic005G064400 Sobic006G194900--Sobic002G352501 Sobic006G194900--Sobic010G129300 Sobic006G194900--Sobic006G007001 Sobic008G188300 Sobic008G188300 Sobic006G194900--Sobic008G188300 Sobic006G194900--Sobic004G309200 Sobic006G194900--Sobic002G352401 Sobic006G194900--Sobic005G081800 Sobic004G316400--Sobic010G129300 Sobic004G316400--Sobic006G007001 Sobic004G316400--Sobic005G081800 Sobic004G316400--Sobic008G188300 Sobic004G316400--Sobic005G064400 Sobic004G029500 Sobic004G029500 Sobic004G316400--Sobic004G029500 Sobic004G316400--Sobic002G095000 Sobic002G058100 Sobic002G058100 Sobic004G316400--Sobic002G058100 Sobic006G006100 Sobic006G006100 Sobic004G316400--Sobic006G006100 Sobic005G064400--Sobic006G007001 Sobic005G064400--Sobic010G129300 Sobic005G064400--Sobic006G006100 Sobic005G064400--Sobic005G081800 Sobic005G064400--Sobic002G352401 Sobic005G064400--Sobic004G029500 Sobic005G064400--Sobic002G095000 Sobic005G064400--Sobic004G316400 Sobic005G064400--Sobic002G058100 Sobic006G007001--Sobic010G129300 Sobic006G007001--Sobic005G064400 Sobic006G007001--Sobic005G081800 Sobic006G007001--Sobic004G029500 Sobic006G007001--Sobic002G095000 Sobic006G007001--Sobic006G006100 Sobic006G007001--Sobic002G058100 Sobic010G191400 Sobic010G191400 Sobic006G007001--Sobic010G191400 Sobic006G006000 Sobic006G006000 Sobic006G007001--Sobic006G006000 Sobic010G129300--Sobic005G081800 Sobic010G129300--Sobic006G007001 Sobic010G129300--Sobic004G029500 Sobic010G129300--Sobic002G095000 Sobic010G129300--Sobic002G058100 Sobic010G129300--Sobic010G191400 Sobic010G129300--Sobic006G006100 Sobic010G129300--Sobic005G064400 Sobic010G129300--Sobic006G006000 Sobic005G081800--Sobic002G095000 Sobic005G081800--Sobic010G129300 Sobic005G081800--Sobic004G029500 Sobic005G081800--Sobic006G007001 Sobic005G081800--Sobic002G058100 Sobic005G027200 Sobic005G027200 Sobic005G081800--Sobic005G027200 Sobic005G081800--Sobic010G191400 Sobic005G081800--Sobic006G006100 Sobic005G081800--Sobic006G006000 Sobic002G352401--Sobic005G064400 Sobic002G352401--Sobic006G007001 Sobic002G352401--Sobic010G129300 Sobic002G352401--Sobic005G081800 Sobic002G352401--Sobic006G006100 Sobic002G352401--Sobic002G095000 Sobic002G352401--Sobic004G029500 Sobic002G352401--Sobic004G316400 Sobic002G352401--Sobic002G058100 Sobic005G179700 Sobic005G179700 Sobic002G352501--Sobic005G179700 Sobic005G200400 Sobic005G200400 Sobic002G352501--Sobic005G200400 Sobic005G027100 Sobic005G027100 Sobic002G352501--Sobic005G027100 Sobic002G352501--Sobic005G064400 Sobic002G352501--Sobic006G194900 Sobic006G144101 Sobic006G144101 Sobic002G352501--Sobic006G144101 Sobic002G345500 Sobic002G345500 Sobic002G352501--Sobic002G345500 Sobic002G352501--Sobic002G352401 Sobic004G090400 Sobic004G090400 Sobic002G352501--Sobic004G090400 Sobic002G095000--Sobic004G029500 Sobic002G095000--Sobic002G058100 Sobic002G095000--Sobic005G081800 Sobic002G095000--Sobic010G191400 Sobic002G095000--Sobic005G027200 Sobic002G095000--Sobic010G129300 Sobic002G095000--Sobic006G006000 Sobic001G349600 Sobic001G349600 Sobic002G095000--Sobic001G349600 Sobic002G095000--Sobic006G007001
Octagon: transcription factors


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