Gene annotation
Transcriptome id Sobic.005G020100.1
Synonym CDC45, Sb05g001720
Functional annotation CDC45B - Putative DNA replication initiation protein, expressed
UniProt C5Y3P1
Pfam PF02724
Panther DB PTHR10507 PTHR10507:SF0
NCBI CDD KOG2475; CDC45 (cell division cycle 45)-like protein
KEGG Orthology K06628; cell division control protein 45
Gene Ontology GO:0006270; DNA replication initiation


Orthologs (automatic annotation)
TAIR AT3G25100 : cell division cycle 45
RAP-DB (Rice) LOC_Os11g03430.1 : CDC45B - Putative DNA replication initiation protein, expressed
MaizeGDB (Corn) Zm00025a053741
Brachypodium KQJ92482
Barley HORVU4Hr1G023520.1 , HORVU5Hr1G045560.1 , HORVU5Hr1G045530.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
2 Sobic.001G271600 transferase family protein, putative, expressed -
3 Sobic.007G000500 HMG1/2, putative, expressed -
4 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
5 Sobic.010G204700 LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.003G374100 beta-galactosidase precursor, putative, expressed -
7 Sobic.010G269700 expressed protein -
8 Sobic.002G272300 expressed protein -
9 Sobic.006G228000 glycine-rich protein 2, putative -
10 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
11 Sobic.009G169800 DEFL4 - Defensin and Defensin-like DEFL family, expressed -
12 Sobic.007G121650 - -
13 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
14 Sobic.003G008800 expressed protein -
15 Sobic.003G373900 universal stress protein domain containing protein, putative, expressed -
16 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
17 Sobic.004G075900 CSLA1 - cellulose synthase-like family A@ mannan synthase, expressed K13680: beta-mannan synthase
18 Sobic.007G116800 BURP domain containing protein, expressed -
19 Sobic.004G331600 MCM5 - Putative minichromosome maintenance MCM complex subunit 5, expressed K02209: MCM5, DNA replication licensing factor MCM5
20 Sobic.006G107500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic005G020100 Sobic005G020100 Sobic007G007800 Sobic007G007800 Sobic005G020100--Sobic007G007800 Sobic001G271600 Sobic001G271600 Sobic005G020100--Sobic001G271600 Sobic007G000500 Sobic007G000500 Sobic005G020100--Sobic007G000500 Sobic003G085900 Sobic003G085900 Sobic005G020100--Sobic003G085900 Sobic010G204700 Sobic010G204700 Sobic005G020100--Sobic010G204700 Sobic003G374100 Sobic003G374100 Sobic005G020100--Sobic003G374100 Sobic010G269700 Sobic010G269700 Sobic005G020100--Sobic010G269700 Sobic002G272300 Sobic002G272300 Sobic005G020100--Sobic002G272300 Sobic006G228000 Sobic006G228000 Sobic005G020100--Sobic006G228000 Sobic007G007800--Sobic002G272300 Sobic001G105800 Sobic001G105800 Sobic007G007800--Sobic001G105800 Sobic009G184200 Sobic009G184200 Sobic007G007800--Sobic009G184200 Sobic001G013400 Sobic001G013400 Sobic007G007800--Sobic001G013400 Sobic002G223900 Sobic002G223900 Sobic007G007800--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic007G007800--Sobic004G331600 Sobic007G007800--Sobic005G020100 Sobic010G092400 Sobic010G092400 Sobic007G007800--Sobic010G092400 Sobic001G083300 Sobic001G083300 Sobic007G007800--Sobic001G083300 Sobic003G365800 Sobic003G365800 Sobic001G271600--Sobic003G365800 Sobic001G271600--Sobic005G020100 Sobic001G271600--Sobic003G374100 Sobic006G107500 Sobic006G107500 Sobic001G271600--Sobic006G107500 Sobic001G271600--Sobic006G228000 Sobic003G295100 Sobic003G295100 Sobic001G271600--Sobic003G295100 Sobic003G090600 Sobic003G090600 Sobic001G271600--Sobic003G090600 Sobic009G169800 Sobic009G169800 Sobic001G271600--Sobic009G169800 Sobic001G271600--Sobic003G085900 Sobic003G373900 Sobic003G373900 Sobic007G000500--Sobic003G373900 Sobic001G540900 Sobic001G540900 Sobic007G000500--Sobic001G540900 Sobic007G000500--Sobic005G020100 Sobic004G313200 Sobic004G313200 Sobic007G000500--Sobic004G313200 Sobic007G116800 Sobic007G116800 Sobic007G000500--Sobic007G116800 Sobic007G000500--Sobic003G085900 Sobic007G000500--Sobic002G272300 Sobic007G000500--Sobic010G269700 Sobic004G257600 Sobic004G257600 Sobic007G000500--Sobic004G257600 Sobic003G085900--Sobic006G107500 Sobic002G360600 Sobic002G360600 Sobic003G085900--Sobic002G360600 Sobic004G237000 Sobic004G237000 Sobic003G085900--Sobic004G237000 Sobic003G085900--Sobic010G092400 Sobic002G430700 Sobic002G430700 Sobic003G085900--Sobic002G430700 Sobic007G147200 Sobic007G147200 Sobic003G085900--Sobic007G147200 Sobic006G163300 Sobic006G163300 Sobic003G085900--Sobic006G163300 Sobic003G046400 Sobic003G046400 Sobic003G085900--Sobic003G046400 Sobic003G316601 Sobic003G316601 Sobic003G085900--Sobic003G316601 Sobic010G204700--Sobic003G374100 Sobic010G204700--Sobic005G020100 Sobic010G230000 Sobic010G230000 Sobic010G204700--Sobic010G230000 Sobic007G121650 Sobic007G121650 Sobic010G204700--Sobic007G121650 Sobic010G204700--Sobic007G007800 Sobic004G238801 Sobic004G238801 Sobic010G204700--Sobic004G238801 Sobic003G444000 Sobic003G444000 Sobic010G204700--Sobic003G444000 Sobic006G111100 Sobic006G111100 Sobic010G204700--Sobic006G111100 Sobic001G439400 Sobic001G439400 Sobic010G204700--Sobic001G439400 Sobic001G137800 Sobic001G137800 Sobic003G374100--Sobic001G137800 Sobic003G374100--Sobic006G228000 Sobic003G129200 Sobic003G129200 Sobic003G374100--Sobic003G129200 Sobic007G043000 Sobic007G043000 Sobic003G374100--Sobic007G043000 Sobic002G121900 Sobic002G121900 Sobic003G374100--Sobic002G121900 Sobic004G234600 Sobic004G234600 Sobic003G374100--Sobic004G234600 Sobic002G053350 Sobic002G053350 Sobic003G374100--Sobic002G053350 Sobic001G235200 Sobic001G235200 Sobic003G374100--Sobic001G235200 Sobic001G235100 Sobic001G235100 Sobic003G374100--Sobic001G235100 Sobic006G274200 Sobic006G274200 Sobic010G269700--Sobic006G274200 Sobic003G019900 Sobic003G019900 Sobic010G269700--Sobic003G019900 Sobic002G222500 Sobic002G222500 Sobic010G269700--Sobic002G222500 Sobic010G269700--Sobic003G373900 Sobic010G269700--Sobic010G092400 Sobic010G086000 Sobic010G086000 Sobic010G269700--Sobic010G086000 Sobic003G002000 Sobic003G002000 Sobic010G269700--Sobic003G002000 Sobic010G269700--Sobic005G020100 Sobic010G241100 Sobic010G241100 Sobic010G269700--Sobic010G241100 Sobic002G272300--Sobic007G007800 Sobic002G272300--Sobic009G184200 Sobic010G147700 Sobic010G147700 Sobic002G272300--Sobic010G147700 Sobic003G032200 Sobic003G032200 Sobic002G272300--Sobic003G032200 Sobic009G087000 Sobic009G087000 Sobic002G272300--Sobic009G087000 Sobic002G272300--Sobic001G083300 Sobic002G272300--Sobic004G331600 Sobic008G129200 Sobic008G129200 Sobic002G272300--Sobic008G129200 Sobic001G456500 Sobic001G456500 Sobic002G272300--Sobic001G456500 Sobic006G228000--Sobic001G137800 Sobic006G228000--Sobic003G374100 Sobic006G228000--Sobic007G043000 Sobic006G228000--Sobic001G235200 Sobic002G237000 Sobic002G237000 Sobic006G228000--Sobic002G237000 Sobic006G228000--Sobic004G234600 Sobic003G092300 Sobic003G092300 Sobic006G228000--Sobic003G092300 Sobic003G300000 Sobic003G300000 Sobic006G228000--Sobic003G300000 Sobic006G228000--Sobic002G121900
Octagon: transcription factors


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