Gene annotation
Transcriptome id Sobic.007G000500.1
Synonym HMGB6, Sb07g000230
Functional annotation HMG1/2, putative, expressed
UniProt C5YLC2
Pfam PF00505
Panther DB PTHR13711 PTHR13711:SF147
NCBI CDD KOG0381; HMG box-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G23420 : high-mobility group box 6
RAP-DB (Rice) LOC_Os08g01100.1 : HMG1/2, putative, expressed
MaizeGDB (Corn) Zm00025a033658
Brachypodium -
Barley -
Wheat TraesCS7A02G329300 , TraesCS7B02G230000 , TraesCS7D02G326200 , TraesCS7D02G326200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G373900 universal stress protein domain containing protein, putative, expressed -
2 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
3 Sobic.005G020100 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
4 Sobic.004G313200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
5 Sobic.007G116800 BURP domain containing protein, expressed -
6 Sobic.003G085900 Glycosyl hydrolase. predicted target of sbi-miR-5568 and sbi-miR-6220 expressed in the stems of sweet sorghum(PubMedID : 26117170)@glycosyl hydrolase, family 31, putative, expressed K15925: alpha-D-xyloside xylohydrolase
7 Sobic.002G272300 expressed protein -
8 Sobic.010G269700 expressed protein -
9 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
10 Sobic.001G142000 deoxyuridine 5-triphosphate nucleotidohydrolase, putative, expressed K01520: dut, dUTP pyrophosphatase
11 Sobic.004G343700 serine/threonine-protein kinase, putative, expressed -
12 Sobic.007G007800 DNA repair metallo-beta-lactamase, putative, expressed K15340: DCLRE1A, SNM1A, DNA cross-link repair 1A protein
13 Sobic.001G271600 transferase family protein, putative, expressed -
14 Sobic.002G430700 glycosyltransferase family 43 protein, putative, expressed -
15 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
16 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -
17 Sobic.010G092400 glycosyl transferase 8 domain containing protein, putative, expressed -
18 Sobic.002G222500 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
19 Sobic.010G204700 LTPL129 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
20 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2


Gene co-expression network
sample Sobic007G000500 Sobic007G000500 Sobic003G373900 Sobic003G373900 Sobic007G000500--Sobic003G373900 Sobic001G540900 Sobic001G540900 Sobic007G000500--Sobic001G540900 Sobic005G020100 Sobic005G020100 Sobic007G000500--Sobic005G020100 Sobic004G313200 Sobic004G313200 Sobic007G000500--Sobic004G313200 Sobic007G116800 Sobic007G116800 Sobic007G000500--Sobic007G116800 Sobic003G085900 Sobic003G085900 Sobic007G000500--Sobic003G085900 Sobic002G272300 Sobic002G272300 Sobic007G000500--Sobic002G272300 Sobic010G269700 Sobic010G269700 Sobic007G000500--Sobic010G269700 Sobic004G257600 Sobic004G257600 Sobic007G000500--Sobic004G257600 Sobic004G343700 Sobic004G343700 Sobic003G373900--Sobic004G343700 Sobic003G373900--Sobic007G000500 Sobic003G373900--Sobic010G269700 Sobic001G074000 Sobic001G074000 Sobic003G373900--Sobic001G074000 Sobic006G274200 Sobic006G274200 Sobic003G373900--Sobic006G274200 Sobic003G373900--Sobic004G313200 Sobic003G019900 Sobic003G019900 Sobic003G373900--Sobic003G019900 Sobic003G373900--Sobic001G540900 Sobic004G246500 Sobic004G246500 Sobic003G373900--Sobic004G246500 Sobic001G540900--Sobic004G257600 Sobic001G540900--Sobic007G000500 Sobic001G140600 Sobic001G140600 Sobic001G540900--Sobic001G140600 Sobic003G260700 Sobic003G260700 Sobic001G540900--Sobic003G260700 Sobic004G271300 Sobic004G271300 Sobic001G540900--Sobic004G271300 Sobic001G177900 Sobic001G177900 Sobic001G540900--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic001G540900--Sobic002G313000 Sobic003G444100 Sobic003G444100 Sobic001G540900--Sobic003G444100 Sobic007G168900 Sobic007G168900 Sobic001G540900--Sobic007G168900 Sobic007G007800 Sobic007G007800 Sobic005G020100--Sobic007G007800 Sobic001G271600 Sobic001G271600 Sobic005G020100--Sobic001G271600 Sobic005G020100--Sobic007G000500 Sobic005G020100--Sobic003G085900 Sobic010G204700 Sobic010G204700 Sobic005G020100--Sobic010G204700 Sobic003G374100 Sobic003G374100 Sobic005G020100--Sobic003G374100 Sobic005G020100--Sobic010G269700 Sobic005G020100--Sobic002G272300 Sobic006G228000 Sobic006G228000 Sobic005G020100--Sobic006G228000 Sobic001G083500 Sobic001G083500 Sobic004G313200--Sobic001G083500 Sobic002G222500 Sobic002G222500 Sobic004G313200--Sobic002G222500 Sobic001G108100 Sobic001G108100 Sobic004G313200--Sobic001G108100 Sobic004G313200--Sobic001G140600 Sobic009G146700 Sobic009G146700 Sobic004G313200--Sobic009G146700 Sobic003G102000 Sobic003G102000 Sobic004G313200--Sobic003G102000 Sobic010G241100 Sobic010G241100 Sobic004G313200--Sobic010G241100 Sobic006G219500 Sobic006G219500 Sobic004G313200--Sobic006G219500 Sobic004G313200--Sobic007G116800 Sobic007G087800 Sobic007G087800 Sobic007G116800--Sobic007G087800 Sobic010G129700 Sobic010G129700 Sobic007G116800--Sobic010G129700 Sobic001G522300 Sobic001G522300 Sobic007G116800--Sobic001G522300 Sobic007G116800--Sobic003G260700 Sobic007G116800--Sobic002G313000 Sobic010G092400 Sobic010G092400 Sobic007G116800--Sobic010G092400 Sobic008G114900 Sobic008G114900 Sobic007G116800--Sobic008G114900 Sobic009G184200 Sobic009G184200 Sobic007G116800--Sobic009G184200 Sobic007G116800--Sobic004G257600 Sobic006G107500 Sobic006G107500 Sobic003G085900--Sobic006G107500 Sobic002G360600 Sobic002G360600 Sobic003G085900--Sobic002G360600 Sobic004G237000 Sobic004G237000 Sobic003G085900--Sobic004G237000 Sobic003G085900--Sobic010G092400 Sobic002G430700 Sobic002G430700 Sobic003G085900--Sobic002G430700 Sobic007G147200 Sobic007G147200 Sobic003G085900--Sobic007G147200 Sobic006G163300 Sobic006G163300 Sobic003G085900--Sobic006G163300 Sobic003G046400 Sobic003G046400 Sobic003G085900--Sobic003G046400 Sobic003G316601 Sobic003G316601 Sobic003G085900--Sobic003G316601 Sobic002G272300--Sobic007G007800 Sobic002G272300--Sobic009G184200 Sobic010G147700 Sobic010G147700 Sobic002G272300--Sobic010G147700 Sobic003G032200 Sobic003G032200 Sobic002G272300--Sobic003G032200 Sobic009G087000 Sobic009G087000 Sobic002G272300--Sobic009G087000 Sobic001G083300 Sobic001G083300 Sobic002G272300--Sobic001G083300 Sobic004G331600 Sobic004G331600 Sobic002G272300--Sobic004G331600 Sobic008G129200 Sobic008G129200 Sobic002G272300--Sobic008G129200 Sobic001G456500 Sobic001G456500 Sobic002G272300--Sobic001G456500 Sobic010G269700--Sobic006G274200 Sobic010G269700--Sobic003G019900 Sobic010G269700--Sobic002G222500 Sobic010G269700--Sobic003G373900 Sobic010G269700--Sobic010G092400 Sobic010G086000 Sobic010G086000 Sobic010G269700--Sobic010G086000 Sobic003G002000 Sobic003G002000 Sobic010G269700--Sobic003G002000 Sobic010G269700--Sobic005G020100 Sobic010G269700--Sobic010G241100 Sobic004G257600--Sobic003G260700 Sobic003G387700 Sobic003G387700 Sobic004G257600--Sobic003G387700 Sobic001G398400 Sobic001G398400 Sobic004G257600--Sobic001G398400 Sobic004G257600--Sobic001G177900 Sobic004G198100 Sobic004G198100 Sobic004G257600--Sobic004G198100 Sobic001G170800 Sobic001G170800 Sobic004G257600--Sobic001G170800 Sobic004G257600--Sobic003G444100 Sobic004G257600--Sobic007G168900 Sobic004G339500 Sobic004G339500 Sobic004G257600--Sobic004G339500
Octagon: transcription factors


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