Gene annotation
Transcriptome id Sobic.001G540900.1
Synonym Sb01g050310, TUB8
Functional annotation tubulin/FtsZ domain containing protein, putative, expressed
UniProt C5WMT4
Pfam PF00091 PF03953
Panther DB PTHR11588:SF114 PTHR11588
NCBI CDD -
KEGG Orthology K07375; tubulin beta
Gene Ontology GO:0005874; microtubule GO:0007017microtubule-based process GO:0003924GTPase activity


Orthologs (automatic annotation)
TAIR AT5G23860 : tubulin beta 8
RAP-DB (Rice) LOC_Os03g01530.1 : tubulin/FtsZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a000132 , Zm00025a030432 , Zm00025a012119 , Zm00025a037439 , Zm00025a024856 , Zm00025a039825 , Zm00025a008433 , Zm00025a024200 , Zm00025a001989 , Zm00025a041941 , Zm00025a008427 , Zm00025a016660 , Zm00025a035181 , Zm00025a004646 , Zm00025a036766 , Zm00025a007533 , Zm00025a017188 , Zm00025a027156 , Zm00025a014491 , Zm00025a018766 , Zm00025a019054 , Zm00025a051791 , Zm00025a040093 , Zm00025a008163
Brachypodium KQJ93503 , KQK12908 , KQK17085 , KQK13880 , KQK24113 , KQK06257 , KQK03976 , KQK05638
Barley HORVU3Hr1G078940.3 , HORVU3Hr1G078940.2 , HORVU3Hr1G078940.1 , HORVU3Hr1G078940.7 , HORVU3Hr1G078940.6 , HORVU3Hr1G078940.5 , HORVU3Hr1G078940.4 , HORVU1Hr1G068170.1 , HORVU1Hr1G068170.3 , HORVU1Hr1G068170.2 , HORVU0Hr1G026030.4 , HORVU0Hr1G026030.3 , HORVU0Hr1G026030.2 , HORVU7Hr1G059990.1 , HORVU1Hr1G064870.4 , HORVU1Hr1G064870.5 , HORVU1Hr1G064870.6 , HORVU1Hr1G064870.7 , HORVU1Hr1G064870.1 , HORVU1Hr1G064870.2 , HORVU1Hr1G064870.3 , HORVU1Hr1G064870.9 , HORVU4Hr1G087740.1 , HORVU4Hr1G087740.3 , HORVU4Hr1G087740.4 , HORVU4Hr1G002530.1 , HORVU4Hr1G002530.2 , HORVU4Hr1G002530.3 , HORVU4Hr1G002530.4 , HORVU4Hr1G002530.5 , HORVU4Hr1G002530.6 , HORVU4Hr1G087740.5 , HORVU4Hr1G087740.2 , HORVU5Hr1G100900.1 , HORVU5Hr1G100900.2 , HORVU5Hr1G100900.5 , HORVU5Hr1G100900.4 , HORVU5Hr1G100900.6 , HORVU7Hr1G107100.4 , HORVU7Hr1G107100.5 , HORVU7Hr1G107100.2 , HORVU7Hr1G107100.3 , HORVU7Hr1G107100.1 , HORVU4Hr1G002530.7 , HORVU6Hr1G027620.5 , HORVU6Hr1G027620.4 , HORVU6Hr1G027620.3 , HORVU6Hr1G027620.2 , HORVU6Hr1G027620.1
Wheat TraesCS4D02G015400 , TraesCS7A02G466600 , TraesCS4B02G017100 , TraesCS3B02G363500 , TraesCS6D02G130500 , TraesCS6D02G130500 , TraesCS4A02G296600 , TraesCS1B02G320800 , TraesCS1A02G309700 , TraesCS1A02G142800 , TraesCS1A02G142800 , TraesCS1A02G142800 , TraesCS5A02G443500 , TraesCS5A02G416400 , TraesCS5A02G416400 , TraesCS1A02G142800 , TraesCS1D02G258800 , TraesCS1B02G269400 , TraesCS5D02G424100 , TraesCS1A02G437700 , TraesCS1A02G437700 , TraesCS6B02G169300 , TraesCS6B02G169300 , TraesCS4B02G366500 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS5A02G069700 , TraesCS5B02G418700 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCS5A02G069800 , TraesCSU02G137900 , TraesCS5A02G534300 , TraesCS5A02G069800 , TraesCS3D02G326900 , TraesCS1A02G258800 , TraesCS1D02G309200 , TraesCS7D02G454200
Populus PNT53825 , PNT56931 , PNT56932


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cDNA sequences
Sobic.001G540900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
2 Sobic.007G000500 HMG1/2, putative, expressed -
3 Sobic.001G140600 expressed protein -
4 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
5 Sobic.004G271300 DNA topoisomerase 2, putative, expressed K03164: DNA topoisomerase II
6 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
7 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
8 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
9 Sobic.007G168900 kinesin motor domain containing protein, putative, expressed K10398: KIF11, kinesin family member 11
10 Sobic.010G129700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
11 Sobic.009G184200 RecF/RecN/SMC N terminal domain containing protein, expressed K06675: structural maintenance of chromosome 4
12 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
13 Sobic.010G111200 "GASR7(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659934)@GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
14 Sobic.006G134200 expressed protein -
15 Sobic.003G032200 IQ calmodulin-binding motif domain containing protein, expressed -
16 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
17 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
18 Sobic.007G116800 BURP domain containing protein, expressed -
19 Sobic.001G398400 expressed protein -
20 Sobic.004G313200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -


Gene co-expression network
sample Sobic001G540900 Sobic001G540900 Sobic004G257600 Sobic004G257600 Sobic001G540900--Sobic004G257600 Sobic007G000500 Sobic007G000500 Sobic001G540900--Sobic007G000500 Sobic001G140600 Sobic001G140600 Sobic001G540900--Sobic001G140600 Sobic003G260700 Sobic003G260700 Sobic001G540900--Sobic003G260700 Sobic004G271300 Sobic004G271300 Sobic001G540900--Sobic004G271300 Sobic001G177900 Sobic001G177900 Sobic001G540900--Sobic001G177900 Sobic002G313000 Sobic002G313000 Sobic001G540900--Sobic002G313000 Sobic003G444100 Sobic003G444100 Sobic001G540900--Sobic003G444100 Sobic007G168900 Sobic007G168900 Sobic001G540900--Sobic007G168900 Sobic004G257600--Sobic003G260700 Sobic003G387700 Sobic003G387700 Sobic004G257600--Sobic003G387700 Sobic001G398400 Sobic001G398400 Sobic004G257600--Sobic001G398400 Sobic004G257600--Sobic001G177900 Sobic004G198100 Sobic004G198100 Sobic004G257600--Sobic004G198100 Sobic001G170800 Sobic001G170800 Sobic004G257600--Sobic001G170800 Sobic004G257600--Sobic003G444100 Sobic004G257600--Sobic007G168900 Sobic004G339500 Sobic004G339500 Sobic004G257600--Sobic004G339500 Sobic003G373900 Sobic003G373900 Sobic007G000500--Sobic003G373900 Sobic007G000500--Sobic001G540900 Sobic005G020100 Sobic005G020100 Sobic007G000500--Sobic005G020100 Sobic004G313200 Sobic004G313200 Sobic007G000500--Sobic004G313200 Sobic007G116800 Sobic007G116800 Sobic007G000500--Sobic007G116800 Sobic003G085900 Sobic003G085900 Sobic007G000500--Sobic003G085900 Sobic002G272300 Sobic002G272300 Sobic007G000500--Sobic002G272300 Sobic010G269700 Sobic010G269700 Sobic007G000500--Sobic010G269700 Sobic007G000500--Sobic004G257600 Sobic001G140600--Sobic002G313000 Sobic008G006800 Sobic008G006800 Sobic001G140600--Sobic008G006800 Sobic001G140600--Sobic001G177900 Sobic001G140600--Sobic001G540900 Sobic001G140600--Sobic003G260700 Sobic001G140600--Sobic004G271300 Sobic010G215300 Sobic010G215300 Sobic001G140600--Sobic010G215300 Sobic003G102000 Sobic003G102000 Sobic001G140600--Sobic003G102000 Sobic001G140600--Sobic004G339500 Sobic003G260700--Sobic001G170800 Sobic003G260700--Sobic004G257600 Sobic003G260700--Sobic004G339500 Sobic003G260700--Sobic001G398400 Sobic003G260700--Sobic004G198100 Sobic003G260700--Sobic004G271300 Sobic003G260700--Sobic008G006800 Sobic003G260700--Sobic001G177900 Sobic003G260700--Sobic002G313000 Sobic004G271300--Sobic007G168900 Sobic005G000500 Sobic005G000500 Sobic004G271300--Sobic005G000500 Sobic004G271300--Sobic003G260700 Sobic004G271300--Sobic001G170800 Sobic005G005700 Sobic005G005700 Sobic004G271300--Sobic005G005700 Sobic004G271300--Sobic001G398400 Sobic004G271300--Sobic008G006800 Sobic004G271300--Sobic001G177900 Sobic005G144600 Sobic005G144600 Sobic004G271300--Sobic005G144600 Sobic001G177900--Sobic007G168900 Sobic003G314900 Sobic003G314900 Sobic001G177900--Sobic003G314900 Sobic001G177900--Sobic005G000500 Sobic001G177900--Sobic003G260700 Sobic001G177900--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic001G177900--Sobic010G008900 Sobic001G177900--Sobic004G339500 Sobic001G177900--Sobic005G144600 Sobic003G294500 Sobic003G294500 Sobic001G177900--Sobic003G294500 Sobic010G129700 Sobic010G129700 Sobic002G313000--Sobic010G129700 Sobic002G313000--Sobic003G260700 Sobic008G114900 Sobic008G114900 Sobic002G313000--Sobic008G114900 Sobic002G313000--Sobic008G006800 Sobic008G125700 Sobic008G125700 Sobic002G313000--Sobic008G125700 Sobic002G313000--Sobic001G140600 Sobic002G319300 Sobic002G319300 Sobic002G313000--Sobic002G319300 Sobic002G313000--Sobic001G170800 Sobic002G313000--Sobic001G398400 Sobic003G444100--Sobic005G000500 Sobic003G444100--Sobic001G170800 Sobic003G444100--Sobic003G260700 Sobic003G444100--Sobic007G168900 Sobic003G444100--Sobic001G177900 Sobic003G444100--Sobic001G398400 Sobic003G444100--Sobic004G257600 Sobic003G444100--Sobic003G314900 Sobic010G105400 Sobic010G105400 Sobic003G444100--Sobic010G105400 Sobic007G168900--Sobic005G000500 Sobic007G168900--Sobic005G144600 Sobic007G168900--Sobic004G271300 Sobic007G168900--Sobic001G177900 Sobic007G168900--Sobic003G314900 Sobic007G168900--Sobic003G294500 Sobic007G168900--Sobic003G260700 Sobic007G168900--Sobic010G008900 Sobic010G147700 Sobic010G147700 Sobic007G168900--Sobic010G147700
Octagon: transcription factors


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