Gene annotation
Transcriptome id Sobic.006G134200.2
Synonym Sb06g021400
Functional annotation expressed protein
UniProt A0A1Z5RDT8
Pfam -
Panther DB PTHR34124 PTHR34124:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02640 : -
RAP-DB (Rice) LOC_Os04g41900.1 : expressed protein
MaizeGDB (Corn) Zm00025a010828 , Zm00025a056386
Brachypodium KQJ83370
Barley HORVU2Hr1G085690.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G134200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
2 Sobic.003G387700 expressed protein -
3 Sobic.007G207700 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
4 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
5 Sobic.007G100600 plastocyanin-like domain containing protein, putative, expressed -
6 Sobic.001G075400 expressed protein -
7 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
8 Sobic.010G105400 chromosome condensation protein like, putative, expressed K06678: YCG1, condensin complex subunit 3
9 Sobic.005G144600 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
10 Sobic.004G047100 EH domain-containing protein 1, putative, expressed K12483: EH domain-containing protein 1
11 Sobic.006G116500 expressed protein -
12 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
13 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
14 Sobic.007G017700 IQ calmodulin-binding motif domain containing protein, expressed -
15 Sobic.001G091500 expressed protein -
16 Sobic.003G444100 "OsCCS52B(Ortholog in rice:Su’udi et al., 2012)"(PubMedID : 31659875)@WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
17 Sobic.006G179200 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
18 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
19 Sobic.002G222500 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
20 Sobic.001G456500 RPA1B - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1


Gene co-expression network
sample Sobic006G134200 Sobic006G134200 Sobic003G328500 Sobic003G328500 Sobic006G134200--Sobic003G328500 Sobic003G387700 Sobic003G387700 Sobic006G134200--Sobic003G387700 Sobic007G207700 Sobic007G207700 Sobic006G134200--Sobic007G207700 Sobic004G257600 Sobic004G257600 Sobic006G134200--Sobic004G257600 Sobic007G100600 Sobic007G100600 Sobic006G134200--Sobic007G100600 Sobic001G075400 Sobic001G075400 Sobic006G134200--Sobic001G075400 Sobic001G177900 Sobic001G177900 Sobic006G134200--Sobic001G177900 Sobic010G105400 Sobic010G105400 Sobic006G134200--Sobic010G105400 Sobic005G144600 Sobic005G144600 Sobic006G134200--Sobic005G144600 Sobic003G328500--Sobic006G134200 Sobic003G328500--Sobic001G177900 Sobic003G328500--Sobic001G075400 Sobic003G328500--Sobic007G207700 Sobic003G328500--Sobic003G387700 Sobic003G328500--Sobic004G257600 Sobic003G260700 Sobic003G260700 Sobic003G328500--Sobic003G260700 Sobic003G328500--Sobic005G144600 Sobic002G426800 Sobic002G426800 Sobic003G328500--Sobic002G426800 Sobic003G387700--Sobic004G257600 Sobic003G387700--Sobic006G134200 Sobic003G387700--Sobic010G105400 Sobic001G091500 Sobic001G091500 Sobic003G387700--Sobic001G091500 Sobic001G105800 Sobic001G105800 Sobic003G387700--Sobic001G105800 Sobic010G119300 Sobic010G119300 Sobic003G387700--Sobic010G119300 Sobic001G398400 Sobic001G398400 Sobic003G387700--Sobic001G398400 Sobic003G387700--Sobic003G328500 Sobic003G387700--Sobic007G100600 Sobic007G207700--Sobic003G328500 Sobic007G207700--Sobic006G134200 Sobic005G016300 Sobic005G016300 Sobic007G207700--Sobic005G016300 Sobic007G017700 Sobic007G017700 Sobic007G207700--Sobic007G017700 Sobic007G207700--Sobic001G075400 Sobic006G179200 Sobic006G179200 Sobic007G207700--Sobic006G179200 Sobic007G207700--Sobic001G091500 Sobic005G210600 Sobic005G210600 Sobic007G207700--Sobic005G210600 Sobic002G313000 Sobic002G313000 Sobic007G207700--Sobic002G313000 Sobic004G257600--Sobic003G260700 Sobic004G257600--Sobic003G387700 Sobic004G257600--Sobic001G398400 Sobic004G257600--Sobic001G177900 Sobic004G198100 Sobic004G198100 Sobic004G257600--Sobic004G198100 Sobic001G170800 Sobic001G170800 Sobic004G257600--Sobic001G170800 Sobic003G444100 Sobic003G444100 Sobic004G257600--Sobic003G444100 Sobic007G168900 Sobic007G168900 Sobic004G257600--Sobic007G168900 Sobic004G339500 Sobic004G339500 Sobic004G257600--Sobic004G339500 Sobic001G070300 Sobic001G070300 Sobic007G100600--Sobic001G070300 Sobic007G100600--Sobic004G257600 Sobic007G100600--Sobic003G387700 Sobic007G100600--Sobic003G328500 Sobic001G142000 Sobic001G142000 Sobic007G100600--Sobic001G142000 Sobic010G003100 Sobic010G003100 Sobic007G100600--Sobic010G003100 Sobic007G100600--Sobic006G134200 Sobic002G255500 Sobic002G255500 Sobic007G100600--Sobic002G255500 Sobic010G274000 Sobic010G274000 Sobic007G100600--Sobic010G274000 Sobic001G075400--Sobic003G328500 Sobic004G077100 Sobic004G077100 Sobic001G075400--Sobic004G077100 Sobic001G075400--Sobic001G177900 Sobic001G075400--Sobic006G134200 Sobic009G233500 Sobic009G233500 Sobic001G075400--Sobic009G233500 Sobic001G075400--Sobic007G207700 Sobic001G075400--Sobic002G313000 Sobic001G075400--Sobic005G016300 Sobic001G131300 Sobic001G131300 Sobic001G075400--Sobic001G131300 Sobic001G177900--Sobic007G168900 Sobic003G314900 Sobic003G314900 Sobic001G177900--Sobic003G314900 Sobic005G000500 Sobic005G000500 Sobic001G177900--Sobic005G000500 Sobic001G177900--Sobic003G260700 Sobic001G177900--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic001G177900--Sobic010G008900 Sobic001G177900--Sobic004G339500 Sobic001G177900--Sobic005G144600 Sobic003G294500 Sobic003G294500 Sobic001G177900--Sobic003G294500 Sobic010G105400--Sobic005G144600 Sobic004G047100 Sobic004G047100 Sobic010G105400--Sobic004G047100 Sobic009G184200 Sobic009G184200 Sobic010G105400--Sobic009G184200 Sobic010G105400--Sobic005G000500 Sobic010G105400--Sobic001G398400 Sobic003G179500 Sobic003G179500 Sobic010G105400--Sobic003G179500 Sobic006G124400 Sobic006G124400 Sobic010G105400--Sobic006G124400 Sobic010G105400--Sobic007G168900 Sobic002G204400 Sobic002G204400 Sobic010G105400--Sobic002G204400 Sobic005G144600--Sobic007G168900 Sobic005G144600--Sobic010G105400 Sobic005G144600--Sobic003G294500 Sobic005G144600--Sobic005G000500 Sobic005G144600--Sobic003G314900 Sobic005G144600--Sobic001G177900 Sobic005G144600--Sobic004G047100 Sobic004G271300 Sobic004G271300 Sobic005G144600--Sobic004G271300 Sobic005G144600--Sobic003G179500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.