Gene annotation
Transcriptome id Sobic.001G075400.1
Synonym Sb01g006810
Functional annotation expressed protein
UniProt C5WZ78
Pfam -
Panther DB PTHR37241
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G17000 : -
RAP-DB (Rice) LOC_Os03g56070.1 : expressed protein
MaizeGDB (Corn) Zm00025a016689 , Zm00025a056979 , Zm00025a008350 , Zm00025a012687 , Zm00025a033627
Brachypodium KQK12990
Barley HORVU0Hr1G007690.10 , HORVU0Hr1G007690.11 , HORVU0Hr1G007690.6 , HORVU0Hr1G007690.5 , HORVU0Hr1G007690.2 , HORVU0Hr1G007690.3 , HORVU0Hr1G007690.1 , HORVU0Hr1G007690.8 , HORVU0Hr1G007690.9 , HORVU0Hr1G007690.7 , HORVU0Hr1G007690.4
Wheat TraesCS4A02G244600 , TraesCS4A02G244600 , TraesCS4B02G070400 , TraesCS4D02G069200 , TraesCS4B02G070400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
2 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
3 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
4 Sobic.006G134200 expressed protein -
5 Sobic.009G233500 expressed protein -
6 Sobic.007G207700 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
7 Sobic.002G313000 targeting protein-related, putative, expressed K16812: targeting protein for Xklp2
8 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G131300 centromere protein, putative, expressed -
10 Sobic.006G214000 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
11 Sobic.004G257600 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
12 Sobic.001G140600 expressed protein -
13 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
14 Sobic.003G260700 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
15 Sobic.001G170800 "Transport protein(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659835)@transport protein-related, putative, expressed -
16 Sobic.006G179200 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
17 Sobic.004G339500 kinesin motor domain containing protein, putative, expressed -
18 Sobic.003G041700 DNA mismatch repair protein MSH6-2, putative, expressed K08737: DNA mismatch repair protein MSH6
19 Sobic.010G104400 cysteine-rich repeat secretory protein precursor, putative, expressed -
20 Sobic.002G255500 expressed protein -


Gene co-expression network
sample Sobic001G075400 Sobic001G075400 Sobic003G328500 Sobic003G328500 Sobic001G075400--Sobic003G328500 Sobic004G077100 Sobic004G077100 Sobic001G075400--Sobic004G077100 Sobic001G177900 Sobic001G177900 Sobic001G075400--Sobic001G177900 Sobic006G134200 Sobic006G134200 Sobic001G075400--Sobic006G134200 Sobic009G233500 Sobic009G233500 Sobic001G075400--Sobic009G233500 Sobic007G207700 Sobic007G207700 Sobic001G075400--Sobic007G207700 Sobic002G313000 Sobic002G313000 Sobic001G075400--Sobic002G313000 Sobic005G016300 Sobic005G016300 Sobic001G075400--Sobic005G016300 Sobic001G131300 Sobic001G131300 Sobic001G075400--Sobic001G131300 Sobic003G328500--Sobic006G134200 Sobic003G328500--Sobic001G177900 Sobic003G328500--Sobic001G075400 Sobic003G328500--Sobic007G207700 Sobic003G387700 Sobic003G387700 Sobic003G328500--Sobic003G387700 Sobic004G257600 Sobic004G257600 Sobic003G328500--Sobic004G257600 Sobic003G260700 Sobic003G260700 Sobic003G328500--Sobic003G260700 Sobic005G144600 Sobic005G144600 Sobic003G328500--Sobic005G144600 Sobic002G426800 Sobic002G426800 Sobic003G328500--Sobic002G426800 Sobic004G077100--Sobic001G075400 Sobic004G077100--Sobic009G233500 Sobic006G069500 Sobic006G069500 Sobic004G077100--Sobic006G069500 Sobic004G180400 Sobic004G180400 Sobic004G077100--Sobic004G180400 Sobic003G041700 Sobic003G041700 Sobic004G077100--Sobic003G041700 Sobic004G077100--Sobic005G016300 Sobic003G273800 Sobic003G273800 Sobic004G077100--Sobic003G273800 Sobic010G104400 Sobic010G104400 Sobic004G077100--Sobic010G104400 Sobic006G214000 Sobic006G214000 Sobic004G077100--Sobic006G214000 Sobic007G168900 Sobic007G168900 Sobic001G177900--Sobic007G168900 Sobic003G314900 Sobic003G314900 Sobic001G177900--Sobic003G314900 Sobic005G000500 Sobic005G000500 Sobic001G177900--Sobic005G000500 Sobic001G177900--Sobic003G260700 Sobic001G170800 Sobic001G170800 Sobic001G177900--Sobic001G170800 Sobic010G008900 Sobic010G008900 Sobic001G177900--Sobic010G008900 Sobic004G339500 Sobic004G339500 Sobic001G177900--Sobic004G339500 Sobic001G177900--Sobic005G144600 Sobic003G294500 Sobic003G294500 Sobic001G177900--Sobic003G294500 Sobic006G134200--Sobic003G328500 Sobic006G134200--Sobic003G387700 Sobic006G134200--Sobic007G207700 Sobic006G134200--Sobic004G257600 Sobic007G100600 Sobic007G100600 Sobic006G134200--Sobic007G100600 Sobic006G134200--Sobic001G075400 Sobic006G134200--Sobic001G177900 Sobic010G105400 Sobic010G105400 Sobic006G134200--Sobic010G105400 Sobic006G134200--Sobic005G144600 Sobic009G233500--Sobic004G077100 Sobic009G233500--Sobic004G180400 Sobic009G233500--Sobic001G075400 Sobic009G233500--Sobic007G207700 Sobic009G233500--Sobic006G069500 Sobic009G233500--Sobic005G016300 Sobic009G233500--Sobic003G328500 Sobic007G197700 Sobic007G197700 Sobic009G233500--Sobic007G197700 Sobic001G533200 Sobic001G533200 Sobic009G233500--Sobic001G533200 Sobic007G207700--Sobic003G328500 Sobic007G207700--Sobic006G134200 Sobic007G207700--Sobic005G016300 Sobic007G017700 Sobic007G017700 Sobic007G207700--Sobic007G017700 Sobic007G207700--Sobic001G075400 Sobic006G179200 Sobic006G179200 Sobic007G207700--Sobic006G179200 Sobic001G091500 Sobic001G091500 Sobic007G207700--Sobic001G091500 Sobic005G210600 Sobic005G210600 Sobic007G207700--Sobic005G210600 Sobic007G207700--Sobic002G313000 Sobic010G129700 Sobic010G129700 Sobic002G313000--Sobic010G129700 Sobic002G313000--Sobic003G260700 Sobic008G114900 Sobic008G114900 Sobic002G313000--Sobic008G114900 Sobic008G006800 Sobic008G006800 Sobic002G313000--Sobic008G006800 Sobic008G125700 Sobic008G125700 Sobic002G313000--Sobic008G125700 Sobic001G140600 Sobic001G140600 Sobic002G313000--Sobic001G140600 Sobic002G319300 Sobic002G319300 Sobic002G313000--Sobic002G319300 Sobic002G313000--Sobic001G170800 Sobic001G398400 Sobic001G398400 Sobic002G313000--Sobic001G398400 Sobic005G016300--Sobic007G207700 Sobic005G016300--Sobic004G077100 Sobic005G016300--Sobic001G075400 Sobic005G016300--Sobic005G210600 Sobic005G016300--Sobic003G328500 Sobic005G016300--Sobic006G134200 Sobic010G111200 Sobic010G111200 Sobic005G016300--Sobic010G111200 Sobic001G205000 Sobic001G205000 Sobic005G016300--Sobic001G205000 Sobic005G016300--Sobic002G313000 Sobic006G035600 Sobic006G035600 Sobic001G131300--Sobic006G035600 Sobic001G131300--Sobic001G177900 Sobic001G131300--Sobic005G000500 Sobic003G118100 Sobic003G118100 Sobic001G131300--Sobic003G118100 Sobic001G131300--Sobic010G008900 Sobic001G131300--Sobic007G168900 Sobic001G131300--Sobic006G179200 Sobic001G131300--Sobic005G144600 Sobic001G131300--Sobic003G314900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.