Gene annotation
Transcriptome id Sobic.003G041700.1
Synonym MSH7, ATMSH7, MSH6-2, Sb03g003700
Functional annotation DNA mismatch repair protein MSH6-2, putative, expressed
UniProt A0A1B6Q178
Pfam PF05188 PF05192 PF01624 PF00488
Panther DB PTHR11361 PTHR11361:SF31
NCBI CDD -
KEGG Orthology K08737; DNA mismatch repair protein MSH6
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G24495 : MUTS homolog 7
RAP-DB (Rice) LOC_Os01g08540.1 : DNA mismatch repair protein MSH6-2, putative, expressed
MaizeGDB (Corn) Zm00025a023161
Brachypodium KQK03035
Barley -
Wheat TraesCS3A02G117500 , TraesCS3D02G119400 , TraesCS3B02G136600 , TraesCS3B02G136600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
2 Sobic.003G387600 expressed protein K10750: chromatin assembly factor 1 subunit A
3 Sobic.001G403200 receptor-like kinase RHG1, putative, expressed -
4 Sobic.006G214000 expressed protein K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
5 Sobic.001G075400 expressed protein -
6 Sobic.008G113800 expressed protein -
7 Sobic.010G104400 cysteine-rich repeat secretory protein precursor, putative, expressed -
8 Sobic.003G273800 IQ calmodulin-binding motif domain containing protein, expressed -
9 Sobic.001G131300 centromere protein, putative, expressed -
10 Sobic.004G271500 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
11 Sobic.004G117300 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
12 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
13 Sobic.008G129200 MCM7 - Putative minichromosome maintenance MCM complex subunit 7, expressed K02210: MCM7, DNA replication licensing factor MCM7
14 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
15 Sobic.002G020500 ternary complex factor MIP1, putative, expressed -
16 Sobic.001G533200 plastocyanin-like domain containing protein, putative, expressed -
17 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
18 Sobic.006G035600 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
19 Sobic.001G177900 Kinesin motor domain domain containing protein, expressed K10400: kinesin family member 15
20 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -


Gene co-expression network
sample Sobic003G041700 Sobic003G041700 Sobic004G077100 Sobic004G077100 Sobic003G041700--Sobic004G077100 Sobic003G387600 Sobic003G387600 Sobic003G041700--Sobic003G387600 Sobic001G403200 Sobic001G403200 Sobic003G041700--Sobic001G403200 Sobic006G214000 Sobic006G214000 Sobic003G041700--Sobic006G214000 Sobic001G075400 Sobic001G075400 Sobic003G041700--Sobic001G075400 Sobic008G113800 Sobic008G113800 Sobic003G041700--Sobic008G113800 Sobic010G104400 Sobic010G104400 Sobic003G041700--Sobic010G104400 Sobic003G273800 Sobic003G273800 Sobic003G041700--Sobic003G273800 Sobic001G131300 Sobic001G131300 Sobic003G041700--Sobic001G131300 Sobic004G077100--Sobic001G075400 Sobic009G233500 Sobic009G233500 Sobic004G077100--Sobic009G233500 Sobic006G069500 Sobic006G069500 Sobic004G077100--Sobic006G069500 Sobic004G180400 Sobic004G180400 Sobic004G077100--Sobic004G180400 Sobic004G077100--Sobic003G041700 Sobic005G016300 Sobic005G016300 Sobic004G077100--Sobic005G016300 Sobic004G077100--Sobic003G273800 Sobic004G077100--Sobic010G104400 Sobic004G077100--Sobic006G214000 Sobic003G387600--Sobic006G214000 Sobic003G387600--Sobic003G041700 Sobic006G029300 Sobic006G029300 Sobic003G387600--Sobic006G029300 Sobic003G387600--Sobic001G075400 Sobic010G067900 Sobic010G067900 Sobic003G387600--Sobic010G067900 Sobic008G129200 Sobic008G129200 Sobic003G387600--Sobic008G129200 Sobic003G387600--Sobic004G077100 Sobic010G147700 Sobic010G147700 Sobic003G387600--Sobic010G147700 Sobic003G387600--Sobic001G131300 Sobic002G020500 Sobic002G020500 Sobic001G403200--Sobic002G020500 Sobic004G271500 Sobic004G271500 Sobic001G403200--Sobic004G271500 Sobic001G403200--Sobic003G041700 Sobic001G403200--Sobic010G104400 Sobic001G403200--Sobic008G113800 Sobic003G151900 Sobic003G151900 Sobic001G403200--Sobic003G151900 Sobic001G314000 Sobic001G314000 Sobic001G403200--Sobic001G314000 Sobic001G038400 Sobic001G038400 Sobic001G403200--Sobic001G038400 Sobic006G009500 Sobic006G009500 Sobic001G403200--Sobic006G009500 Sobic001G177900 Sobic001G177900 Sobic006G214000--Sobic001G177900 Sobic006G214000--Sobic006G029300 Sobic006G214000--Sobic010G147700 Sobic007G168900 Sobic007G168900 Sobic006G214000--Sobic007G168900 Sobic001G540900 Sobic001G540900 Sobic006G214000--Sobic001G540900 Sobic006G214000--Sobic001G075400 Sobic003G294500 Sobic003G294500 Sobic006G214000--Sobic003G294500 Sobic006G214000--Sobic003G387600 Sobic003G314900 Sobic003G314900 Sobic006G214000--Sobic003G314900 Sobic003G328500 Sobic003G328500 Sobic001G075400--Sobic003G328500 Sobic001G075400--Sobic004G077100 Sobic001G075400--Sobic001G177900 Sobic006G134200 Sobic006G134200 Sobic001G075400--Sobic006G134200 Sobic001G075400--Sobic009G233500 Sobic007G207700 Sobic007G207700 Sobic001G075400--Sobic007G207700 Sobic002G313000 Sobic002G313000 Sobic001G075400--Sobic002G313000 Sobic001G075400--Sobic005G016300 Sobic001G075400--Sobic001G131300 Sobic008G113800--Sobic001G403200 Sobic008G113800--Sobic004G271500 Sobic010G274000 Sobic010G274000 Sobic008G113800--Sobic010G274000 Sobic008G113800--Sobic003G041700 Sobic002G191000 Sobic002G191000 Sobic008G113800--Sobic002G191000 Sobic001G103000 Sobic001G103000 Sobic008G113800--Sobic001G103000 Sobic009G088200 Sobic009G088200 Sobic008G113800--Sobic009G088200 Sobic007G152900 Sobic007G152900 Sobic008G113800--Sobic007G152900 Sobic003G420100 Sobic003G420100 Sobic008G113800--Sobic003G420100 Sobic002G016400 Sobic002G016400 Sobic010G104400--Sobic002G016400 Sobic003G296500 Sobic003G296500 Sobic010G104400--Sobic003G296500 Sobic006G149300 Sobic006G149300 Sobic010G104400--Sobic006G149300 Sobic007G208100 Sobic007G208100 Sobic010G104400--Sobic007G208100 Sobic010G104400--Sobic001G177900 Sobic010G104400--Sobic002G020500 Sobic004G233700 Sobic004G233700 Sobic010G104400--Sobic004G233700 Sobic010G104400--Sobic001G403200 Sobic004G287700 Sobic004G287700 Sobic010G104400--Sobic004G287700 Sobic003G273800--Sobic006G069500 Sobic002G237700 Sobic002G237700 Sobic003G273800--Sobic002G237700 Sobic001G511200 Sobic001G511200 Sobic003G273800--Sobic001G511200 Sobic009G178900 Sobic009G178900 Sobic003G273800--Sobic009G178900 Sobic009G233600 Sobic009G233600 Sobic003G273800--Sobic009G233600 Sobic003G273800--Sobic004G077100 Sobic003G273800--Sobic004G180400 Sobic005G188400 Sobic005G188400 Sobic003G273800--Sobic005G188400 Sobic001G059900 Sobic001G059900 Sobic003G273800--Sobic001G059900 Sobic006G035600 Sobic006G035600 Sobic001G131300--Sobic006G035600 Sobic001G131300--Sobic001G177900 Sobic005G000500 Sobic005G000500 Sobic001G131300--Sobic005G000500 Sobic003G118100 Sobic003G118100 Sobic001G131300--Sobic003G118100 Sobic010G008900 Sobic010G008900 Sobic001G131300--Sobic010G008900 Sobic001G131300--Sobic007G168900 Sobic006G179200 Sobic006G179200 Sobic001G131300--Sobic006G179200 Sobic005G144600 Sobic005G144600 Sobic001G131300--Sobic005G144600 Sobic001G131300--Sobic003G314900
Octagon: transcription factors


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