Gene annotation
Transcriptome id Sobic.003G184500.2,Sobic.003G184500.1
Synonym Sb03g024600
Functional annotation carboxyl-terminal peptidase, putative, expressed
UniProt A0A1B6Q423 , A0A1B6Q430
Pfam PF14365 PF03080
Panther DB PTHR31589 PTHR31589:SF22
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10750 : Protein of Unknown Function (DUF239)
RAP-DB (Rice) LOC_Os01g36660.1 : carboxyl-terminal peptidase, putative, expressed
MaizeGDB (Corn) Zm00025a043074 , Zm00025a023262 , Zm00025a028811 , Zm00025a035717
Brachypodium KQK07295 , KQK08247 , KQK07294 , KQK02907
Barley -
Wheat TraesCS3B02G228700 , TraesCS3A02G092700 , TraesCS3D02G202200 , TraesCS3A02G201800 , TraesCS1D02G115500 , TraesCS1A02G113900 , TraesCS1A02G113900 , TraesCS3B02G107900 , TraesCS1B02G134200 , TraesCS7D02G234500 , TraesCS7D02G234500 , TraesCS3D02G092800 , TraesCS7B02G132600 , TraesCS7A02G234300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G430000 basic helix-loop-helix, putative, expressed -
2 Sobic.001G399400 calmodulin binding protein, putative, expressed -
3 Sobic.008G107600 expressed protein -
4 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
5 Sobic.002G359800 GRAS family transcription factor domain containing protein, expressed -
6 Sobic.002G184800 expressed protein -
7 Sobic.003G399400 expressed protein -
8 Sobic.002G219500 ATPase, putative, expressed -
9 Sobic.003G023666 - -
10 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
11 Sobic.003G041700 DNA mismatch repair protein MSH6-2, putative, expressed K08737: DNA mismatch repair protein MSH6
12 Sobic.004G049800 peroxidase precursor, putative, expressed K00430: peroxidase
13 Sobic.008G037200 expressed protein -
14 Sobic.002G004500 expressed protein -
15 Sobic.001G216800 expressed protein -
16 Sobic.008G127200 expressed protein -
17 Sobic.004G025200 expressed protein -
18 Sobic.001G403200 receptor-like kinase RHG1, putative, expressed -
19 Sobic.001G038400 expressed protein -
20 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -


Gene co-expression network
sample Sobic003G184500 Sobic003G184500 Sobic001G430000 Sobic001G430000 Sobic003G184500--Sobic001G430000 Sobic001G399400 Sobic001G399400 Sobic003G184500--Sobic001G399400 Sobic008G107600 Sobic008G107600 Sobic003G184500--Sobic008G107600 Sobic006G271100 Sobic006G271100 Sobic003G184500--Sobic006G271100 Sobic002G359800 Sobic002G359800 Sobic003G184500--Sobic002G359800 Sobic002G184800 Sobic002G184800 Sobic003G184500--Sobic002G184800 Sobic003G399400 Sobic003G399400 Sobic003G184500--Sobic003G399400 Sobic002G219500 Sobic002G219500 Sobic003G184500--Sobic002G219500 Sobic003G023666 Sobic003G023666 Sobic003G184500--Sobic003G023666 Sobic007G224800 Sobic007G224800 Sobic001G430000--Sobic007G224800 Sobic001G430000--Sobic002G359800 Sobic010G036200 Sobic010G036200 Sobic001G430000--Sobic010G036200 Sobic001G430000--Sobic002G184800 Sobic001G430000--Sobic003G184500 Sobic008G037200 Sobic008G037200 Sobic001G430000--Sobic008G037200 Sobic003G201300 Sobic003G201300 Sobic001G430000--Sobic003G201300 Sobic001G430000--Sobic003G023666 Sobic008G127200 Sobic008G127200 Sobic001G430000--Sobic008G127200 Sobic001G399400--Sobic002G219500 Sobic001G399400--Sobic006G271100 Sobic001G399400--Sobic003G184500 Sobic009G070000 Sobic009G070000 Sobic001G399400--Sobic009G070000 Sobic006G228100 Sobic006G228100 Sobic001G399400--Sobic006G228100 Sobic001G399400--Sobic003G399400 Sobic002G004500 Sobic002G004500 Sobic001G399400--Sobic002G004500 Sobic005G188400 Sobic005G188400 Sobic001G399400--Sobic005G188400 Sobic004G077100 Sobic004G077100 Sobic001G399400--Sobic004G077100 Sobic008G107600--Sobic003G184500 Sobic010G104400 Sobic010G104400 Sobic008G107600--Sobic010G104400 Sobic009G078900 Sobic009G078900 Sobic008G107600--Sobic009G078900 Sobic008G107600--Sobic001G399400 Sobic008G137000 Sobic008G137000 Sobic008G107600--Sobic008G137000 Sobic001G403200 Sobic001G403200 Sobic008G107600--Sobic001G403200 Sobic008G107600--Sobic004G077100 Sobic008G107600--Sobic002G184800 Sobic004G323100 Sobic004G323100 Sobic008G107600--Sobic004G323100 Sobic006G271100--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic006G271100--Sobic003G047300 Sobic006G271100--Sobic006G228100 Sobic006G271100--Sobic001G399400 Sobic004G049800 Sobic004G049800 Sobic006G271100--Sobic004G049800 Sobic001G511200 Sobic001G511200 Sobic006G271100--Sobic001G511200 Sobic006G271100--Sobic003G184500 Sobic009G229100 Sobic009G229100 Sobic006G271100--Sobic009G229100 Sobic006G271100--Sobic002G219500 Sobic002G359800--Sobic002G184800 Sobic002G359800--Sobic001G430000 Sobic001G038400 Sobic001G038400 Sobic002G359800--Sobic001G038400 Sobic002G359800--Sobic003G184500 Sobic010G260600 Sobic010G260600 Sobic002G359800--Sobic010G260600 Sobic004G129700 Sobic004G129700 Sobic002G359800--Sobic004G129700 Sobic002G359800--Sobic010G036200 Sobic009G165300 Sobic009G165300 Sobic002G359800--Sobic009G165300 Sobic002G359800--Sobic008G037200 Sobic002G184800--Sobic002G359800 Sobic002G184800--Sobic001G038400 Sobic002G184800--Sobic001G430000 Sobic002G184800--Sobic010G260600 Sobic002G184800--Sobic003G184500 Sobic002G184800--Sobic009G165300 Sobic002G184800--Sobic001G403200 Sobic002G184800--Sobic004G129700 Sobic002G184800--Sobic010G036200 Sobic003G399400--Sobic002G004500 Sobic003G399400--Sobic002G219500 Sobic003G399400--Sobic003G184500 Sobic006G108700 Sobic006G108700 Sobic003G399400--Sobic006G108700 Sobic003G399400--Sobic006G271100 Sobic009G159600 Sobic009G159600 Sobic003G399400--Sobic009G159600 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic005G016300 Sobic005G016300 Sobic003G399400--Sobic005G016300 Sobic002G219500--Sobic001G399400 Sobic002G219500--Sobic003G399400 Sobic002G219500--Sobic006G271100 Sobic004G225400 Sobic004G225400 Sobic002G219500--Sobic004G225400 Sobic002G219500--Sobic005G188400 Sobic002G219500--Sobic003G184500 Sobic002G219500--Sobic006G228100 Sobic002G219500--Sobic002G004500 Sobic002G219500--Sobic009G159600 Sobic003G023666--Sobic001G430000 Sobic003G023666--Sobic008G037200 Sobic003G023666--Sobic004G049800 Sobic003G023666--Sobic003G184500 Sobic003G023666--Sobic007G224800 Sobic003G023666--Sobic001G511200 Sobic003G023666--Sobic004G077100 Sobic006G069500 Sobic006G069500 Sobic003G023666--Sobic006G069500 Sobic003G273800 Sobic003G273800 Sobic003G023666--Sobic003G273800
Octagon: transcription factors


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