Gene annotation
Transcriptome id Sobic.002G219500.1
Synonym Sb02g026090
Functional annotation ATPase, putative, expressed
UniProt C5XDT4
Pfam PF00004 PF14363
Panther DB PTHR23070 PTHR23070:SF43
NCBI CDD KOG0743; AAA+-type ATPase
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G57480 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g27340.1 : ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a047197
Brachypodium KQJ90448
Barley HORVU5Hr1G066780.1 , HORVU5Hr1G066780.2
Wheat TraesCS2A02G584000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G399400 calmodulin binding protein, putative, expressed -
2 Sobic.003G399400 expressed protein -
3 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
4 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
5 Sobic.005G188400 remorin C-terminal domain containing protein, putative, expressed -
6 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
7 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
8 Sobic.002G004500 expressed protein -
9 Sobic.009G159600 ATROPGEF7/ROPGEF7, putative, expressed -
10 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
11 Sobic.005G210600 expressed protein -
12 Sobic.006G069500 glutaredoxin, putative, expressed -
13 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -
14 Sobic.001G530300 HOTHEAD precursor, putative, expressed -
15 Sobic.004G180400 remorin family protein, putative, expressed -
16 Sobic.001G059900 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
17 Sobic.008G127200 expressed protein -
18 Sobic.001G379500 expressed protein -
19 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
20 Sobic.002G022600 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage


Gene co-expression network
sample Sobic002G219500 Sobic002G219500 Sobic001G399400 Sobic001G399400 Sobic002G219500--Sobic001G399400 Sobic003G399400 Sobic003G399400 Sobic002G219500--Sobic003G399400 Sobic006G271100 Sobic006G271100 Sobic002G219500--Sobic006G271100 Sobic004G225400 Sobic004G225400 Sobic002G219500--Sobic004G225400 Sobic005G188400 Sobic005G188400 Sobic002G219500--Sobic005G188400 Sobic003G184500 Sobic003G184500 Sobic002G219500--Sobic003G184500 Sobic006G228100 Sobic006G228100 Sobic002G219500--Sobic006G228100 Sobic002G004500 Sobic002G004500 Sobic002G219500--Sobic002G004500 Sobic009G159600 Sobic009G159600 Sobic002G219500--Sobic009G159600 Sobic001G399400--Sobic002G219500 Sobic001G399400--Sobic006G271100 Sobic001G399400--Sobic003G184500 Sobic009G070000 Sobic009G070000 Sobic001G399400--Sobic009G070000 Sobic001G399400--Sobic006G228100 Sobic001G399400--Sobic003G399400 Sobic001G399400--Sobic002G004500 Sobic001G399400--Sobic005G188400 Sobic004G077100 Sobic004G077100 Sobic001G399400--Sobic004G077100 Sobic003G399400--Sobic002G004500 Sobic003G399400--Sobic002G219500 Sobic003G399400--Sobic003G184500 Sobic006G108700 Sobic006G108700 Sobic003G399400--Sobic006G108700 Sobic003G399400--Sobic006G271100 Sobic003G399400--Sobic009G159600 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic005G016300 Sobic005G016300 Sobic003G399400--Sobic005G016300 Sobic006G271100--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic006G271100--Sobic003G047300 Sobic006G271100--Sobic006G228100 Sobic006G271100--Sobic001G399400 Sobic004G049800 Sobic004G049800 Sobic006G271100--Sobic004G049800 Sobic001G511200 Sobic001G511200 Sobic006G271100--Sobic001G511200 Sobic006G271100--Sobic003G184500 Sobic009G229100 Sobic009G229100 Sobic006G271100--Sobic009G229100 Sobic006G271100--Sobic002G219500 Sobic004G225400--Sobic006G228100 Sobic001G530300 Sobic001G530300 Sobic004G225400--Sobic001G530300 Sobic004G225400--Sobic006G271100 Sobic004G225400--Sobic009G070000 Sobic004G225400--Sobic002G219500 Sobic007G017900 Sobic007G017900 Sobic004G225400--Sobic007G017900 Sobic004G225400--Sobic002G004500 Sobic004G225400--Sobic001G399400 Sobic005G111600 Sobic005G111600 Sobic004G225400--Sobic005G111600 Sobic006G069500 Sobic006G069500 Sobic005G188400--Sobic006G069500 Sobic003G364700 Sobic003G364700 Sobic005G188400--Sobic003G364700 Sobic003G273800 Sobic003G273800 Sobic005G188400--Sobic003G273800 Sobic008G127200 Sobic008G127200 Sobic005G188400--Sobic008G127200 Sobic009G233600 Sobic009G233600 Sobic005G188400--Sobic009G233600 Sobic005G188400--Sobic001G511200 Sobic005G188400--Sobic002G219500 Sobic004G180400 Sobic004G180400 Sobic005G188400--Sobic004G180400 Sobic002G237700 Sobic002G237700 Sobic005G188400--Sobic002G237700 Sobic001G430000 Sobic001G430000 Sobic003G184500--Sobic001G430000 Sobic003G184500--Sobic001G399400 Sobic008G107600 Sobic008G107600 Sobic003G184500--Sobic008G107600 Sobic003G184500--Sobic006G271100 Sobic002G359800 Sobic002G359800 Sobic003G184500--Sobic002G359800 Sobic002G184800 Sobic002G184800 Sobic003G184500--Sobic002G184800 Sobic003G184500--Sobic003G399400 Sobic003G184500--Sobic002G219500 Sobic003G023666 Sobic003G023666 Sobic003G184500--Sobic003G023666 Sobic006G228100--Sobic001G530300 Sobic006G228100--Sobic004G225400 Sobic006G228100--Sobic006G271100 Sobic006G228100--Sobic009G070000 Sobic006G228100--Sobic005G111600 Sobic006G228100--Sobic002G004500 Sobic010G246500 Sobic010G246500 Sobic006G228100--Sobic010G246500 Sobic006G228100--Sobic001G399400 Sobic008G137500 Sobic008G137500 Sobic006G228100--Sobic008G137500 Sobic002G004500--Sobic003G399400 Sobic002G004500--Sobic006G108700 Sobic002G004500--Sobic006G228100 Sobic002G004500--Sobic006G271100 Sobic002G004500--Sobic001G399400 Sobic002G004500--Sobic002G219500 Sobic002G004500--Sobic004G225400 Sobic002G004500--Sobic003G184500 Sobic002G004500--Sobic001G530300 Sobic004G259101 Sobic004G259101 Sobic009G159600--Sobic004G259101 Sobic003G349800 Sobic003G349800 Sobic009G159600--Sobic003G349800 Sobic009G159600--Sobic003G399400 Sobic009G159600--Sobic002G219500 Sobic001G258100 Sobic001G258100 Sobic009G159600--Sobic001G258100 Sobic009G159600--Sobic004G225400 Sobic009G159600--Sobic002G004500 Sobic001G026700 Sobic001G026700 Sobic009G159600--Sobic001G026700 Sobic003G174900 Sobic003G174900 Sobic009G159600--Sobic003G174900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.