Gene annotation
Transcriptome id Sobic.003G047300.1
Synonym Sb03g004120
Functional annotation phototropic-responsive NPH3 family protein, putative, expressed
UniProt C5XMT0
Pfam PF03000
Panther DB PTHR32370 PTHR32370:SF39
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G52770 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os05g08530.1 : phototropic-responsive NPH3 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a007699 , Zm00025a023208
Brachypodium KQK02980
Barley HORVU3Hr1G023030.8 , HORVU3Hr1G023030.3 , HORVU3Hr1G023030.2 , HORVU3Hr1G023030.7 , HORVU3Hr1G023030.6 , HORVU3Hr1G023030.5 , HORVU3Hr1G023030.4 , HORVU7Hr1G038170.2 , HORVU7Hr1G038170.3 , HORVU7Hr1G038170.1 , HORVU7Hr1G038170.6 , HORVU7Hr1G038170.7 , HORVU7Hr1G038170.4 , HORVU7Hr1G038170.5 , HORVU7Hr1G038170.8
Wheat TraesCS5D02G175800 , TraesCS5D02G175800 , TraesCS1B02G137700 , TraesCS1B02G137700 , TraesCS3B02G143900 , TraesCS5B02G168600 , TraesCS5B02G168600 , TraesCS5B02G168600 , TraesCS5B02G168600 , TraesCS5A02G171100 , TraesCS3A02G123900 , TraesCS3A02G123900 , TraesCS3D02G125500 , TraesCS1D02G119100 , TraesCS3D02G125500 , TraesCS1A02G118100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
2 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
3 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -
4 Sobic.004G296100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.005G111600 CRP7 - Cysteine-rich family protein precursor, expressed -
6 Sobic.003G364700 expressed protein -
7 Sobic.010G145200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CPuORF31 - conserved peptide uORF-containing transcript, expressed -
8 Sobic.009G229100 expressed protein -
9 Sobic.004G049800 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.008G127200 expressed protein -
11 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
12 Sobic.002G022600 AP2-like ethylene-responsive transcription factor AINTEGUMENTA, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
13 Sobic.007G017900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
14 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
15 Sobic.001G527500 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.003G201300 hsp20/alpha crystallin family protein, putative, expressed -
17 Sobic.008G078600 NADP-dependent oxidoreductase, putative, expressed -
18 Sobic.003G343100 expressed protein -
19 Sobic.003G178200 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.002G004400 expressed protein -


Gene co-expression network
sample Sobic003G047300 Sobic003G047300 Sobic009G070000 Sobic009G070000 Sobic003G047300--Sobic009G070000 Sobic006G271100 Sobic006G271100 Sobic003G047300--Sobic006G271100 Sobic001G049000 Sobic001G049000 Sobic003G047300--Sobic001G049000 Sobic004G296100 Sobic004G296100 Sobic003G047300--Sobic004G296100 Sobic005G111600 Sobic005G111600 Sobic003G047300--Sobic005G111600 Sobic003G364700 Sobic003G364700 Sobic003G047300--Sobic003G364700 Sobic010G145200 Sobic010G145200 Sobic003G047300--Sobic010G145200 Sobic009G229100 Sobic009G229100 Sobic003G047300--Sobic009G229100 Sobic004G049800 Sobic004G049800 Sobic003G047300--Sobic004G049800 Sobic009G070000--Sobic006G271100 Sobic009G070000--Sobic003G047300 Sobic009G070000--Sobic009G229100 Sobic009G070000--Sobic005G111600 Sobic009G070000--Sobic003G364700 Sobic009G070000--Sobic004G049800 Sobic006G228100 Sobic006G228100 Sobic009G070000--Sobic006G228100 Sobic009G070000--Sobic001G049000 Sobic001G511200 Sobic001G511200 Sobic009G070000--Sobic001G511200 Sobic006G271100--Sobic009G070000 Sobic006G271100--Sobic003G047300 Sobic006G271100--Sobic006G228100 Sobic001G399400 Sobic001G399400 Sobic006G271100--Sobic001G399400 Sobic006G271100--Sobic004G049800 Sobic006G271100--Sobic001G511200 Sobic003G184500 Sobic003G184500 Sobic006G271100--Sobic003G184500 Sobic006G271100--Sobic009G229100 Sobic002G219500 Sobic002G219500 Sobic006G271100--Sobic002G219500 Sobic001G378550 Sobic001G378550 Sobic001G049000--Sobic001G378550 Sobic003G343100 Sobic003G343100 Sobic001G049000--Sobic003G343100 Sobic008G078600 Sobic008G078600 Sobic001G049000--Sobic008G078600 Sobic002G004400 Sobic002G004400 Sobic001G049000--Sobic002G004400 Sobic007G210400 Sobic007G210400 Sobic001G049000--Sobic007G210400 Sobic006G090201 Sobic006G090201 Sobic001G049000--Sobic006G090201 Sobic010G014600 Sobic010G014600 Sobic001G049000--Sobic010G014600 Sobic005G189400 Sobic005G189400 Sobic001G049000--Sobic005G189400 Sobic007G072901 Sobic007G072901 Sobic001G049000--Sobic007G072901 Sobic004G296100--Sobic004G049800 Sobic004G296100--Sobic003G047300 Sobic004G296100--Sobic009G070000 Sobic004G296100--Sobic006G271100 Sobic004G296100--Sobic005G111600 Sobic002G025300 Sobic002G025300 Sobic004G296100--Sobic002G025300 Sobic002G206400 Sobic002G206400 Sobic004G296100--Sobic002G206400 Sobic008G144300 Sobic008G144300 Sobic004G296100--Sobic008G144300 Sobic007G169000 Sobic007G169000 Sobic004G296100--Sobic007G169000 Sobic005G111600--Sobic009G070000 Sobic008G137500 Sobic008G137500 Sobic005G111600--Sobic008G137500 Sobic005G111600--Sobic003G047300 Sobic005G111600--Sobic006G271100 Sobic005G111600--Sobic009G229100 Sobic005G111600--Sobic006G228100 Sobic002G408500 Sobic002G408500 Sobic005G111600--Sobic002G408500 Sobic005G111600--Sobic002G206400 Sobic005G111600--Sobic004G296100 Sobic003G364700--Sobic009G229100 Sobic003G364700--Sobic001G511200 Sobic002G356700 Sobic002G356700 Sobic003G364700--Sobic002G356700 Sobic007G051501 Sobic007G051501 Sobic003G364700--Sobic007G051501 Sobic009G233600 Sobic009G233600 Sobic003G364700--Sobic009G233600 Sobic005G022400 Sobic005G022400 Sobic003G364700--Sobic005G022400 Sobic003G423100 Sobic003G423100 Sobic003G364700--Sobic003G423100 Sobic003G178200 Sobic003G178200 Sobic003G364700--Sobic003G178200 Sobic003G364700--Sobic009G070000 Sobic010G145200--Sobic002G004400 Sobic010G145200--Sobic003G178200 Sobic010G145200--Sobic007G072901 Sobic003G245700 Sobic003G245700 Sobic010G145200--Sobic003G245700 Sobic010G145200--Sobic002G356700 Sobic010G145200--Sobic005G189400 Sobic001G361500 Sobic001G361500 Sobic010G145200--Sobic001G361500 Sobic010G145200--Sobic006G090201 Sobic010G145200--Sobic003G343100 Sobic009G229100--Sobic003G364700 Sobic009G229100--Sobic009G233600 Sobic009G229100--Sobic002G356700 Sobic001G527500 Sobic001G527500 Sobic009G229100--Sobic001G527500 Sobic009G229100--Sobic003G178200 Sobic007G017900 Sobic007G017900 Sobic009G229100--Sobic007G017900 Sobic009G229100--Sobic003G245700 Sobic009G229100--Sobic001G511200 Sobic009G229100--Sobic003G423100 Sobic004G049800--Sobic004G296100 Sobic004G049800--Sobic006G271100 Sobic004G049800--Sobic009G070000 Sobic004G049800--Sobic003G047300 Sobic001G430000 Sobic001G430000 Sobic004G049800--Sobic001G430000 Sobic004G049800--Sobic001G511200 Sobic003G023666 Sobic003G023666 Sobic004G049800--Sobic003G023666 Sobic008G127200 Sobic008G127200 Sobic004G049800--Sobic008G127200 Sobic004G049800--Sobic003G364700
Octagon: transcription factors


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