Gene annotation
Transcriptome id Sobic.004G296100.1
Synonym Sb04g033000
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5XRZ0
Pfam PF05553
Panther DB PTHR34059 PTHR34059:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G16790 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os02g43900.1 : expressed protein
MaizeGDB (Corn) Zm00025a020886 , Zm00025a032194
Brachypodium PNT69169
Barley HORVU1Hr1G055920.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G049800 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -
3 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
4 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
5 Sobic.005G111600 CRP7 - Cysteine-rich family protein precursor, expressed -
6 Sobic.002G025300 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@expressed protein -
7 Sobic.002G206400 similar to Os09g0423800 protein(PubMedID : 29862293)@AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
8 Sobic.008G144300 cytochrome P450, putative, expressed -
9 Sobic.007G169000 similar to Putative uncharacterized protein P0562A06.5(PubMedID : 29862293)@harpin-induced protein 1 domain containing protein, expressed -
10 Sobic.006G166900 transferase family protein, putative, expressed -
11 Sobic.007G008400 - -
12 Sobic.003G023666 - -
13 Sobic.002G004500 expressed protein -
14 Sobic.002G171600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
15 Sobic.001G399400 calmodulin binding protein, putative, expressed -
16 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
17 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
18 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -
19 Sobic.007G209100 expressed protein -
20 Sobic.008G037200 expressed protein -


Gene co-expression network
sample Sobic004G296100 Sobic004G296100 Sobic004G049800 Sobic004G049800 Sobic004G296100--Sobic004G049800 Sobic003G047300 Sobic003G047300 Sobic004G296100--Sobic003G047300 Sobic009G070000 Sobic009G070000 Sobic004G296100--Sobic009G070000 Sobic006G271100 Sobic006G271100 Sobic004G296100--Sobic006G271100 Sobic005G111600 Sobic005G111600 Sobic004G296100--Sobic005G111600 Sobic002G025300 Sobic002G025300 Sobic004G296100--Sobic002G025300 Sobic002G206400 Sobic002G206400 Sobic004G296100--Sobic002G206400 Sobic008G144300 Sobic008G144300 Sobic004G296100--Sobic008G144300 Sobic007G169000 Sobic007G169000 Sobic004G296100--Sobic007G169000 Sobic004G049800--Sobic004G296100 Sobic004G049800--Sobic006G271100 Sobic004G049800--Sobic009G070000 Sobic004G049800--Sobic003G047300 Sobic001G430000 Sobic001G430000 Sobic004G049800--Sobic001G430000 Sobic001G511200 Sobic001G511200 Sobic004G049800--Sobic001G511200 Sobic003G023666 Sobic003G023666 Sobic004G049800--Sobic003G023666 Sobic008G127200 Sobic008G127200 Sobic004G049800--Sobic008G127200 Sobic003G364700 Sobic003G364700 Sobic004G049800--Sobic003G364700 Sobic003G047300--Sobic009G070000 Sobic003G047300--Sobic006G271100 Sobic001G049000 Sobic001G049000 Sobic003G047300--Sobic001G049000 Sobic003G047300--Sobic004G296100 Sobic003G047300--Sobic005G111600 Sobic003G047300--Sobic003G364700 Sobic010G145200 Sobic010G145200 Sobic003G047300--Sobic010G145200 Sobic009G229100 Sobic009G229100 Sobic003G047300--Sobic009G229100 Sobic003G047300--Sobic004G049800 Sobic009G070000--Sobic006G271100 Sobic009G070000--Sobic003G047300 Sobic009G070000--Sobic009G229100 Sobic009G070000--Sobic005G111600 Sobic009G070000--Sobic003G364700 Sobic009G070000--Sobic004G049800 Sobic006G228100 Sobic006G228100 Sobic009G070000--Sobic006G228100 Sobic009G070000--Sobic001G049000 Sobic009G070000--Sobic001G511200 Sobic006G271100--Sobic009G070000 Sobic006G271100--Sobic003G047300 Sobic006G271100--Sobic006G228100 Sobic001G399400 Sobic001G399400 Sobic006G271100--Sobic001G399400 Sobic006G271100--Sobic004G049800 Sobic006G271100--Sobic001G511200 Sobic003G184500 Sobic003G184500 Sobic006G271100--Sobic003G184500 Sobic006G271100--Sobic009G229100 Sobic002G219500 Sobic002G219500 Sobic006G271100--Sobic002G219500 Sobic005G111600--Sobic009G070000 Sobic008G137500 Sobic008G137500 Sobic005G111600--Sobic008G137500 Sobic005G111600--Sobic003G047300 Sobic005G111600--Sobic006G271100 Sobic005G111600--Sobic009G229100 Sobic005G111600--Sobic006G228100 Sobic002G408500 Sobic002G408500 Sobic005G111600--Sobic002G408500 Sobic005G111600--Sobic002G206400 Sobic005G111600--Sobic004G296100 Sobic002G280500 Sobic002G280500 Sobic002G025300--Sobic002G280500 Sobic005G147800 Sobic005G147800 Sobic002G025300--Sobic005G147800 Sobic002G025300--Sobic004G296100 Sobic010G096200 Sobic010G096200 Sobic002G025300--Sobic010G096200 Sobic007G142300 Sobic007G142300 Sobic002G025300--Sobic007G142300 Sobic001G265900 Sobic001G265900 Sobic002G025300--Sobic001G265900 Sobic002G025300--Sobic002G206400 Sobic002G397400 Sobic002G397400 Sobic002G025300--Sobic002G397400 Sobic002G045200 Sobic002G045200 Sobic002G025300--Sobic002G045200 Sobic002G206400--Sobic005G111600 Sobic002G206400--Sobic009G070000 Sobic002G206400--Sobic002G025300 Sobic002G206400--Sobic004G296100 Sobic002G206400--Sobic003G047300 Sobic002G206400--Sobic006G271100 Sobic002G206400--Sobic006G228100 Sobic002G206400--Sobic004G049800 Sobic002G206400--Sobic008G137500 Sobic008G144300--Sobic001G049000 Sobic008G144300--Sobic004G296100 Sobic004G231800 Sobic004G231800 Sobic008G144300--Sobic004G231800 Sobic008G144300--Sobic004G049800 Sobic008G144300--Sobic003G047300 Sobic008G078600 Sobic008G078600 Sobic008G144300--Sobic008G078600 Sobic001G378550 Sobic001G378550 Sobic008G144300--Sobic001G378550 Sobic001G267266 Sobic001G267266 Sobic008G144300--Sobic001G267266 Sobic002G302100 Sobic002G302100 Sobic008G144300--Sobic002G302100 Sobic003G022800 Sobic003G022800 Sobic007G169000--Sobic003G022800 Sobic002G171600 Sobic002G171600 Sobic007G169000--Sobic002G171600 Sobic007G209100 Sobic007G209100 Sobic007G169000--Sobic007G209100 Sobic004G342900 Sobic004G342900 Sobic007G169000--Sobic004G342900 Sobic007G169000--Sobic004G296100 Sobic009G178900 Sobic009G178900 Sobic007G169000--Sobic009G178900 Sobic003G337100 Sobic003G337100 Sobic007G169000--Sobic003G337100 Sobic007G169000--Sobic003G364700 Sobic007G169000--Sobic003G047300
Octagon: transcription factors


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