Gene annotation
Transcriptome id Sobic.001G399400.1
Synonym Sb01g037820
Functional annotation calmodulin binding protein, putative, expressed
UniProt A0A1Z5SAG6
Pfam PF07887
Panther DB PTHR31713 PTHR31713:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006950; response to stress GO:0005516calmodulin binding


Orthologs (automatic annotation)
TAIR AT5G57580 : Calmodulin-binding protein
RAP-DB (Rice) LOC_Os03g18960.1 : calmodulin binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a052607 , Zm00025a002091
Brachypodium KQK22049
Barley HORVU4Hr1G054630.8 , HORVU4Hr1G054630.9 , HORVU4Hr1G054630.4 , HORVU4Hr1G054630.5 , HORVU4Hr1G054630.6 , HORVU4Hr1G054630.7 , HORVU4Hr1G054630.2 , HORVU4Hr1G054630.3 , HORVU4Hr1G054630.16 , HORVU4Hr1G054630.14 , HORVU4Hr1G054630.15 , HORVU4Hr1G054630.12 , HORVU4Hr1G054630.13 , HORVU4Hr1G054630.10 , HORVU4Hr1G054630.11
Wheat TraesCS4D02G188200 , TraesCS4D02G188200 , TraesCS4B02G186900 , TraesCS4B02G186900 , TraesCS4B02G186900 , TraesCS4B02G186900 , TraesCS4A02G117500 , TraesCS4A02G117500 , TraesCS4A02G117500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G219500 ATPase, putative, expressed -
2 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
3 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
4 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
5 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
6 Sobic.003G399400 expressed protein -
7 Sobic.002G004500 expressed protein -
8 Sobic.005G188400 remorin C-terminal domain containing protein, putative, expressed -
9 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
10 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -
11 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
12 Sobic.006G069500 glutaredoxin, putative, expressed -
13 Sobic.008G107600 expressed protein -
14 Sobic.008G127200 expressed protein -
15 Sobic.001G530300 HOTHEAD precursor, putative, expressed -
16 Sobic.004G180400 remorin family protein, putative, expressed -
17 Sobic.004G049800 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
19 Sobic.001G511200 expressed protein -
20 Sobic.004G296100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic001G399400 Sobic001G399400 Sobic002G219500 Sobic002G219500 Sobic001G399400--Sobic002G219500 Sobic006G271100 Sobic006G271100 Sobic001G399400--Sobic006G271100 Sobic003G184500 Sobic003G184500 Sobic001G399400--Sobic003G184500 Sobic009G070000 Sobic009G070000 Sobic001G399400--Sobic009G070000 Sobic006G228100 Sobic006G228100 Sobic001G399400--Sobic006G228100 Sobic003G399400 Sobic003G399400 Sobic001G399400--Sobic003G399400 Sobic002G004500 Sobic002G004500 Sobic001G399400--Sobic002G004500 Sobic005G188400 Sobic005G188400 Sobic001G399400--Sobic005G188400 Sobic004G077100 Sobic004G077100 Sobic001G399400--Sobic004G077100 Sobic002G219500--Sobic001G399400 Sobic002G219500--Sobic003G399400 Sobic002G219500--Sobic006G271100 Sobic004G225400 Sobic004G225400 Sobic002G219500--Sobic004G225400 Sobic002G219500--Sobic005G188400 Sobic002G219500--Sobic003G184500 Sobic002G219500--Sobic006G228100 Sobic002G219500--Sobic002G004500 Sobic009G159600 Sobic009G159600 Sobic002G219500--Sobic009G159600 Sobic006G271100--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic006G271100--Sobic003G047300 Sobic006G271100--Sobic006G228100 Sobic006G271100--Sobic001G399400 Sobic004G049800 Sobic004G049800 Sobic006G271100--Sobic004G049800 Sobic001G511200 Sobic001G511200 Sobic006G271100--Sobic001G511200 Sobic006G271100--Sobic003G184500 Sobic009G229100 Sobic009G229100 Sobic006G271100--Sobic009G229100 Sobic006G271100--Sobic002G219500 Sobic001G430000 Sobic001G430000 Sobic003G184500--Sobic001G430000 Sobic003G184500--Sobic001G399400 Sobic008G107600 Sobic008G107600 Sobic003G184500--Sobic008G107600 Sobic003G184500--Sobic006G271100 Sobic002G359800 Sobic002G359800 Sobic003G184500--Sobic002G359800 Sobic002G184800 Sobic002G184800 Sobic003G184500--Sobic002G184800 Sobic003G184500--Sobic003G399400 Sobic003G184500--Sobic002G219500 Sobic003G023666 Sobic003G023666 Sobic003G184500--Sobic003G023666 Sobic009G070000--Sobic006G271100 Sobic009G070000--Sobic003G047300 Sobic009G070000--Sobic009G229100 Sobic005G111600 Sobic005G111600 Sobic009G070000--Sobic005G111600 Sobic003G364700 Sobic003G364700 Sobic009G070000--Sobic003G364700 Sobic009G070000--Sobic004G049800 Sobic009G070000--Sobic006G228100 Sobic001G049000 Sobic001G049000 Sobic009G070000--Sobic001G049000 Sobic009G070000--Sobic001G511200 Sobic001G530300 Sobic001G530300 Sobic006G228100--Sobic001G530300 Sobic006G228100--Sobic004G225400 Sobic006G228100--Sobic006G271100 Sobic006G228100--Sobic009G070000 Sobic006G228100--Sobic005G111600 Sobic006G228100--Sobic002G004500 Sobic010G246500 Sobic010G246500 Sobic006G228100--Sobic010G246500 Sobic006G228100--Sobic001G399400 Sobic008G137500 Sobic008G137500 Sobic006G228100--Sobic008G137500 Sobic003G399400--Sobic002G004500 Sobic003G399400--Sobic002G219500 Sobic003G399400--Sobic003G184500 Sobic006G108700 Sobic006G108700 Sobic003G399400--Sobic006G108700 Sobic003G399400--Sobic006G271100 Sobic003G399400--Sobic009G159600 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic005G016300 Sobic005G016300 Sobic003G399400--Sobic005G016300 Sobic002G004500--Sobic003G399400 Sobic002G004500--Sobic006G108700 Sobic002G004500--Sobic006G228100 Sobic002G004500--Sobic006G271100 Sobic002G004500--Sobic001G399400 Sobic002G004500--Sobic002G219500 Sobic002G004500--Sobic004G225400 Sobic002G004500--Sobic003G184500 Sobic002G004500--Sobic001G530300 Sobic006G069500 Sobic006G069500 Sobic005G188400--Sobic006G069500 Sobic005G188400--Sobic003G364700 Sobic003G273800 Sobic003G273800 Sobic005G188400--Sobic003G273800 Sobic008G127200 Sobic008G127200 Sobic005G188400--Sobic008G127200 Sobic009G233600 Sobic009G233600 Sobic005G188400--Sobic009G233600 Sobic005G188400--Sobic001G511200 Sobic005G188400--Sobic002G219500 Sobic004G180400 Sobic004G180400 Sobic005G188400--Sobic004G180400 Sobic002G237700 Sobic002G237700 Sobic005G188400--Sobic002G237700 Sobic001G075400 Sobic001G075400 Sobic004G077100--Sobic001G075400 Sobic009G233500 Sobic009G233500 Sobic004G077100--Sobic009G233500 Sobic004G077100--Sobic006G069500 Sobic004G077100--Sobic004G180400 Sobic003G041700 Sobic003G041700 Sobic004G077100--Sobic003G041700 Sobic004G077100--Sobic005G016300 Sobic004G077100--Sobic003G273800 Sobic010G104400 Sobic010G104400 Sobic004G077100--Sobic010G104400 Sobic006G214000 Sobic006G214000 Sobic004G077100--Sobic006G214000
Octagon: transcription factors


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