Gene annotation
| Transcriptome id | Sobic.009G070000.2 |
|---|---|
| Synonym | Sb09g005870, IQD27 |
| Functional annotation | "GW5/qSW5(Ortholog in rice:Liu et al., 2017)" (PubMedID : 31659922) IQ calmodulin-binding motif family protein, expressed |
| UniProt | A0A1B6P708 |
| Pfam | PF00612 PF13178 |
| Panther DB | PTHR32295 PTHR32295:SF27 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005515; protein binding |
Orthologs (automatic annotation)
| TAIR | AT3G16490 : IQ-domain 26 |
|---|---|
| RAP-DB (Rice) | LOC_Os05g09520.1 : IQ calmodulin-binding motif family protein, expressed |
| MaizeGDB (Corn) | Zm00025a023054 , Zm00025a043086 , Zm00025a037523 |
| Brachypodium | KQK07145 , KQK03112 , PNT71661 |
| Barley | HORVU1Hr1G028250.7 , HORVU3Hr1G019630.2 , HORVU3Hr1G019630.3 , HORVU3Hr1G019630.4 , HORVU3Hr1G019630.5 , HORVU3Hr1G019630.6 , HORVU3Hr1G019630.7 , HORVU3Hr1G019630.8 , HORVU1Hr1G028250.6 , HORVU1Hr1G028250.4 , HORVU1Hr1G028250.5 , HORVU1Hr1G028250.2 , HORVU1Hr1G028250.3 , HORVU1Hr1G028250.8 |
| Wheat | TraesCS1A02G122900 , TraesCS3B02G127100 , TraesCS1B02G142100 , TraesCS1B02G142100 , TraesCS4B02G277100 , TraesCS4B02G277100 , TraesCS3A02G108100 , TraesCS1A02G122900 , TraesCS4D02G275700 , TraesCS4D02G275700 , TraesCS4D02G275700 , TraesCS1D02G123800 , TraesCS1D02G123800 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G271100 | glucan endo-1,3-beta-glucosidase precursor, putative, expressed | - |
| 2 | Sobic.003G047300 | phototropic-responsive NPH3 family protein, putative, expressed | - |
| 3 | Sobic.009G229100 | expressed protein | - |
| 4 | Sobic.005G111600 | CRP7 - Cysteine-rich family protein precursor, expressed | - |
| 5 | Sobic.003G364700 | expressed protein | - |
| 6 | Sobic.004G049800 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 7 | Sobic.006G228100 | glycosyl hydrolases family 16 protein, protein, expressed | K08235: xyloglucan:xyloglucosyl transferase |
| 8 | Sobic.001G049000 | OsFBD9 - F-box and FBD domain containing protein, expressed | - |
| 9 | Sobic.001G511200 | expressed protein | - |
| 10 | Sobic.010G145200 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CPuORF31 - conserved peptide uORF-containing transcript, expressed | - |
| 11 | Sobic.002G356700 | OsFBD6 - F-box and FBD domain containing protein, expressed | - |
| 12 | Sobic.004G296100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 13 | Sobic.004G225400 | PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed | - |
| 14 | Sobic.008G127200 | expressed protein | - |
| 15 | Sobic.007G017900 | Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein | - |
| 16 | Sobic.001G399400 | calmodulin binding protein, putative, expressed | - |
| 17 | Sobic.001G527500 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 18 | Sobic.006G053800 | LGC1, putative, expressed | - |
| 19 | Sobic.008G137500 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 20 | Sobic.008G078600 | NADP-dependent oxidoreductase, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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