Gene annotation
Transcriptome id Sobic.006G053800.1
Synonym
Functional annotation LGC1, putative, expressed
UniProt A0A1B6PKC8
Pfam -
Panther DB PTHR33184 PTHR33184:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32583 : -
RAP-DB (Rice) LOC_Os02g30780.1 : LGC1, putative, expressed
MaizeGDB (Corn) Zm00025a055909 , Zm00025a011735
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G267266 - -
2 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
3 Sobic.009G229100 expressed protein -
4 Sobic.003G364700 expressed protein -
5 Sobic.005G111600 CRP7 - Cysteine-rich family protein precursor, expressed -
6 Sobic.001G049000 OsFBD9 - F-box and FBD domain containing protein, expressed -
7 Sobic.008G137500 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.002G302100 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
9 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
10 Sobic.003G047300 phototropic-responsive NPH3 family protein, putative, expressed -
11 Sobic.004G356600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
13 Sobic.002G004400 expressed protein -
14 Sobic.010G145200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@CPuORF31 - conserved peptide uORF-containing transcript, expressed -
15 Sobic.001G527500 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.007G210400 lipoxygenase, chloroplast precursor, putative, expressed K00454: lipoxygenase
17 Sobic.009G194600 expressed protein -
18 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
19 Sobic.001G511200 expressed protein -
20 Sobic.003G343100 expressed protein -


Gene co-expression network
sample Sobic006G053800 Sobic006G053800 Sobic001G267266 Sobic001G267266 Sobic006G053800--Sobic001G267266 Sobic009G070000 Sobic009G070000 Sobic006G053800--Sobic009G070000 Sobic009G229100 Sobic009G229100 Sobic006G053800--Sobic009G229100 Sobic003G364700 Sobic003G364700 Sobic006G053800--Sobic003G364700 Sobic005G111600 Sobic005G111600 Sobic006G053800--Sobic005G111600 Sobic001G049000 Sobic001G049000 Sobic006G053800--Sobic001G049000 Sobic008G137500 Sobic008G137500 Sobic006G053800--Sobic008G137500 Sobic002G302100 Sobic002G302100 Sobic006G053800--Sobic002G302100 Sobic002G356700 Sobic002G356700 Sobic006G053800--Sobic002G356700 Sobic001G267266--Sobic002G302100 Sobic001G267266--Sobic001G049000 Sobic002G004400 Sobic002G004400 Sobic001G267266--Sobic002G004400 Sobic001G267266--Sobic006G053800 Sobic004G356600 Sobic004G356600 Sobic001G267266--Sobic004G356600 Sobic002G034400 Sobic002G034400 Sobic001G267266--Sobic002G034400 Sobic005G097700 Sobic005G097700 Sobic001G267266--Sobic005G097700 Sobic003G221300 Sobic003G221300 Sobic001G267266--Sobic003G221300 Sobic006G228400 Sobic006G228400 Sobic001G267266--Sobic006G228400 Sobic006G271100 Sobic006G271100 Sobic009G070000--Sobic006G271100 Sobic003G047300 Sobic003G047300 Sobic009G070000--Sobic003G047300 Sobic009G070000--Sobic009G229100 Sobic009G070000--Sobic005G111600 Sobic009G070000--Sobic003G364700 Sobic004G049800 Sobic004G049800 Sobic009G070000--Sobic004G049800 Sobic006G228100 Sobic006G228100 Sobic009G070000--Sobic006G228100 Sobic009G070000--Sobic001G049000 Sobic001G511200 Sobic001G511200 Sobic009G070000--Sobic001G511200 Sobic009G229100--Sobic003G364700 Sobic009G233600 Sobic009G233600 Sobic009G229100--Sobic009G233600 Sobic009G229100--Sobic002G356700 Sobic001G527500 Sobic001G527500 Sobic009G229100--Sobic001G527500 Sobic003G178200 Sobic003G178200 Sobic009G229100--Sobic003G178200 Sobic007G017900 Sobic007G017900 Sobic009G229100--Sobic007G017900 Sobic003G245700 Sobic003G245700 Sobic009G229100--Sobic003G245700 Sobic009G229100--Sobic001G511200 Sobic003G423100 Sobic003G423100 Sobic009G229100--Sobic003G423100 Sobic003G364700--Sobic009G229100 Sobic003G364700--Sobic001G511200 Sobic003G364700--Sobic002G356700 Sobic007G051501 Sobic007G051501 Sobic003G364700--Sobic007G051501 Sobic003G364700--Sobic009G233600 Sobic005G022400 Sobic005G022400 Sobic003G364700--Sobic005G022400 Sobic003G364700--Sobic003G423100 Sobic003G364700--Sobic003G178200 Sobic003G364700--Sobic009G070000 Sobic005G111600--Sobic009G070000 Sobic005G111600--Sobic008G137500 Sobic005G111600--Sobic003G047300 Sobic005G111600--Sobic006G271100 Sobic005G111600--Sobic009G229100 Sobic005G111600--Sobic006G228100 Sobic002G408500 Sobic002G408500 Sobic005G111600--Sobic002G408500 Sobic002G206400 Sobic002G206400 Sobic005G111600--Sobic002G206400 Sobic004G296100 Sobic004G296100 Sobic005G111600--Sobic004G296100 Sobic001G378550 Sobic001G378550 Sobic001G049000--Sobic001G378550 Sobic003G343100 Sobic003G343100 Sobic001G049000--Sobic003G343100 Sobic008G078600 Sobic008G078600 Sobic001G049000--Sobic008G078600 Sobic001G049000--Sobic002G004400 Sobic007G210400 Sobic007G210400 Sobic001G049000--Sobic007G210400 Sobic006G090201 Sobic006G090201 Sobic001G049000--Sobic006G090201 Sobic010G014600 Sobic010G014600 Sobic001G049000--Sobic010G014600 Sobic005G189400 Sobic005G189400 Sobic001G049000--Sobic005G189400 Sobic007G072901 Sobic007G072901 Sobic001G049000--Sobic007G072901 Sobic010G191100 Sobic010G191100 Sobic008G137500--Sobic010G191100 Sobic008G137500--Sobic005G111600 Sobic008G137500--Sobic002G408500 Sobic008G137500--Sobic009G229100 Sobic008G137500--Sobic006G228100 Sobic008G137500--Sobic009G070000 Sobic004G155900 Sobic004G155900 Sobic008G137500--Sobic004G155900 Sobic010G246500 Sobic010G246500 Sobic008G137500--Sobic010G246500 Sobic002G154300 Sobic002G154300 Sobic008G137500--Sobic002G154300 Sobic002G302100--Sobic001G267266 Sobic002G302100--Sobic001G049000 Sobic002G302100--Sobic007G210400 Sobic002G302100--Sobic001G378550 Sobic002G302100--Sobic002G004400 Sobic002G302100--Sobic005G097700 Sobic002G302100--Sobic003G343100 Sobic002G175550 Sobic002G175550 Sobic002G302100--Sobic002G175550 Sobic003G174850 Sobic003G174850 Sobic002G302100--Sobic003G174850 Sobic002G356700--Sobic009G233600 Sobic002G356700--Sobic003G178200 Sobic002G356700--Sobic003G245700 Sobic002G356700--Sobic006G090201 Sobic002G356700--Sobic005G022400 Sobic001G361500 Sobic001G361500 Sobic002G356700--Sobic001G361500 Sobic008G023500 Sobic008G023500 Sobic002G356700--Sobic008G023500 Sobic009G164200 Sobic009G164200 Sobic002G356700--Sobic009G164200 Sobic002G356700--Sobic007G072901
Octagon: transcription factors


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