Gene annotation
Transcriptome id Sobic.007G210400.1
Synonym LOX2, ATLOX2, Sb07g027760
Functional annotation lipoxygenase, chloroplast precursor, putative, expressed
UniProt A0A1Z5RBV5 , C9DHL8
Pfam PF00305
Panther DB PTHR11771 PTHR11771:SF42
NCBI CDD -
KEGG Orthology K00454; lipoxygenase
Gene Ontology GO:0016702; oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT3G45140 : lipoxygenase 2
RAP-DB (Rice) LOC_Os08g39850.1 : lipoxygenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a005096 , Zm00025a000916 , Zm00025a034670
Brachypodium KQJ93839 , PNT68389 , KQJ93838 , KQJ98922
Barley HORVU5Hr1G001180.9 , HORVU5Hr1G001180.8 , HORVU5Hr1G001180.1 , HORVU5Hr1G001180.3 , HORVU5Hr1G001180.2 , HORVU5Hr1G001180.5 , HORVU5Hr1G001180.7 , HORVU5Hr1G001180.6 , HORVU6Hr1G033600.8 , HORVU6Hr1G033600.9 , HORVU6Hr1G033600.4 , HORVU6Hr1G033600.5 , HORVU6Hr1G033600.6 , HORVU6Hr1G033600.7 , HORVU6Hr1G033600.1 , HORVU6Hr1G033600.2 , HORVU6Hr1G033600.3 , HORVU5Hr1G055110.2 , HORVU5Hr1G055110.1 , HORVU6Hr1G033600.10 , HORVU4Hr1G076570.7 , HORVU4Hr1G076570.6 , HORVU5Hr1G001180.11 , HORVU7Hr1G050680.8 , HORVU7Hr1G050680.9 , HORVU7Hr1G050680.2 , HORVU7Hr1G050680.3 , HORVU7Hr1G050680.1 , HORVU7Hr1G050680.6 , HORVU7Hr1G050680.7 , HORVU7Hr1G050680.4 , HORVU7Hr1G050680.5
Wheat TraesCS7A02G246200 , TraesCS6A02G166000 , TraesCS7A02G034900 , TraesCS7A02G034900 , TraesCS6B02G193400 , TraesCS7B02G145200 , TraesCS4D02G347300 , TraesCS6D02G154600 , TraesCS7D02G244800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G072901 - -
2 Sobic.007G152200 cytokinesis negative regulator RCP1, putative, expressed -
3 Sobic.005G189400 MBTB51 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.004G330500 expressed protein -
5 Sobic.009G010800 expressed protein -
6 Sobic.010G014600 aspartic protease, putative, expressed -
7 Sobic.006G090201 - -
8 Sobic.003G245700 3-5 exonuclease domain-containing protein, putative, expressed -
9 Sobic.006G185400 - -
10 Sobic.004G325766 - -
11 Sobic.002G004400 expressed protein -
12 Sobic.002G205201 - -
13 Sobic.003G178200 tetratricopeptide repeat containing protein, putative, expressed -
14 Sobic.003G343100 expressed protein -
15 Sobic.008G023500 expressed protein -
16 Sobic.003G045800 - -
17 Sobic.005G037500 expressed protein -
18 Sobic.010G231400 zinc finger, C3HC4 type domain containing protein, expressed -
19 Sobic.009G165050 - -
20 Sobic.001G361500 expressed protein -


Gene co-expression network
sample Sobic007G210400 Sobic007G210400 Sobic007G072901 Sobic007G072901 Sobic007G210400--Sobic007G072901 Sobic007G152200 Sobic007G152200 Sobic007G210400--Sobic007G152200 Sobic005G189400 Sobic005G189400 Sobic007G210400--Sobic005G189400 Sobic004G330500 Sobic004G330500 Sobic007G210400--Sobic004G330500 Sobic009G010800 Sobic009G010800 Sobic007G210400--Sobic009G010800 Sobic010G014600 Sobic010G014600 Sobic007G210400--Sobic010G014600 Sobic006G090201 Sobic006G090201 Sobic007G210400--Sobic006G090201 Sobic003G245700 Sobic003G245700 Sobic007G210400--Sobic003G245700 Sobic006G185400 Sobic006G185400 Sobic007G210400--Sobic006G185400 Sobic004G351866 Sobic004G351866 Sobic007G072901--Sobic004G351866 Sobic008G023500 Sobic008G023500 Sobic007G072901--Sobic008G023500 Sobic007G072901--Sobic005G189400 Sobic007G072901--Sobic006G090201 Sobic007G072901--Sobic003G245700 Sobic007G072901--Sobic004G330500 Sobic007G072901--Sobic006G185400 Sobic007G072901--Sobic007G152200 Sobic003G357000 Sobic003G357000 Sobic007G072901--Sobic003G357000 Sobic007G152200--Sobic004G330500 Sobic007G152200--Sobic005G189400 Sobic007G152200--Sobic006G185400 Sobic002G205201 Sobic002G205201 Sobic007G152200--Sobic002G205201 Sobic001G361500 Sobic001G361500 Sobic007G152200--Sobic001G361500 Sobic006G209100 Sobic006G209100 Sobic007G152200--Sobic006G209100 Sobic007G152200--Sobic008G023500 Sobic009G164200 Sobic009G164200 Sobic007G152200--Sobic009G164200 Sobic005G037500 Sobic005G037500 Sobic007G152200--Sobic005G037500 Sobic005G189400--Sobic004G330500 Sobic005G189400--Sobic006G185400 Sobic005G189400--Sobic007G152200 Sobic005G189400--Sobic002G205201 Sobic005G189400--Sobic001G361500 Sobic005G189400--Sobic006G209100 Sobic005G189400--Sobic008G023500 Sobic005G189400--Sobic003G245700 Sobic005G189400--Sobic006G090201 Sobic004G330500--Sobic005G189400 Sobic004G330500--Sobic006G185400 Sobic004G330500--Sobic007G152200 Sobic004G330500--Sobic002G205201 Sobic004G330500--Sobic001G361500 Sobic004G330500--Sobic006G209100 Sobic004G330500--Sobic008G023500 Sobic004G330500--Sobic005G037500 Sobic004G330500--Sobic006G090201 Sobic009G010800--Sobic006G185400 Sobic009G010800--Sobic004G330500 Sobic009G010800--Sobic005G189400 Sobic009G010800--Sobic001G361500 Sobic009G010800--Sobic002G205201 Sobic009G010800--Sobic006G209100 Sobic009G010800--Sobic007G152200 Sobic009G010800--Sobic008G023500 Sobic009G010800--Sobic003G245700 Sobic010G014600--Sobic005G189400 Sobic010G014600--Sobic004G330500 Sobic010G014600--Sobic006G090201 Sobic010G014600--Sobic007G152200 Sobic006G214101 Sobic006G214101 Sobic010G014600--Sobic006G214101 Sobic010G014600--Sobic006G185400 Sobic010G275550 Sobic010G275550 Sobic010G014600--Sobic010G275550 Sobic004G325766 Sobic004G325766 Sobic010G014600--Sobic004G325766 Sobic004G072950 Sobic004G072950 Sobic010G014600--Sobic004G072950 Sobic006G090201--Sobic005G189400 Sobic006G090201--Sobic004G330500 Sobic006G090201--Sobic006G185400 Sobic006G090201--Sobic007G152200 Sobic006G090201--Sobic006G209100 Sobic006G090201--Sobic003G245700 Sobic006G090201--Sobic001G361500 Sobic006G090201--Sobic008G023500 Sobic006G090201--Sobic002G205201 Sobic003G178200 Sobic003G178200 Sobic003G245700--Sobic003G178200 Sobic003G245700--Sobic005G189400 Sobic003G245700--Sobic006G185400 Sobic003G245700--Sobic004G330500 Sobic003G245700--Sobic008G023500 Sobic003G245700--Sobic006G090201 Sobic003G245700--Sobic002G205201 Sobic003G245700--Sobic007G152200 Sobic003G245700--Sobic001G361500 Sobic006G185400--Sobic004G330500 Sobic006G185400--Sobic005G189400 Sobic006G185400--Sobic001G361500 Sobic006G185400--Sobic007G152200 Sobic006G185400--Sobic002G205201 Sobic006G185400--Sobic006G209100 Sobic006G185400--Sobic008G023500 Sobic006G185400--Sobic005G037500 Sobic006G185400--Sobic009G164200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.