Gene annotation
Transcriptome id Sobic.003G399400.1
Synonym Sb03g043590
Functional annotation expressed protein
UniProt A0A1B6Q7T1
Pfam -
Panther DB PTHR33699 PTHR33699:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os01g68570.1 : expressed protein
MaizeGDB (Corn) Zm00025a039366 , Zm00025a026321
Brachypodium KQK11164
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G004500 expressed protein -
2 Sobic.002G219500 ATPase, putative, expressed -
3 Sobic.003G184500 carboxyl-terminal peptidase, putative, expressed -
4 Sobic.006G108700 atypical receptor-like kinase MARK, putative, expressed -
5 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.009G159600 ATROPGEF7/ROPGEF7, putative, expressed -
7 Sobic.001G399400 calmodulin binding protein, putative, expressed -
8 Sobic.001G451800 atypical receptor-like kinase MARK, putative, expressed -
9 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.004G225400 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
11 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
12 Sobic.006G228100 glycosyl hydrolases family 16 protein, protein, expressed K08235: xyloglucan:xyloglucosyl transferase
13 Sobic.001G216800 expressed protein -
14 Sobic.004G259101 - -
15 Sobic.001G258100 OsSub60 - Putative Subtilisin homologue, expressed -
16 Sobic.003G151900 peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
18 Sobic.004G180400 remorin family protein, putative, expressed -
19 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
20 Sobic.009G178900 histone H3, putative, expressed K11253: histone H3


Gene co-expression network
sample Sobic003G399400 Sobic003G399400 Sobic002G004500 Sobic002G004500 Sobic003G399400--Sobic002G004500 Sobic002G219500 Sobic002G219500 Sobic003G399400--Sobic002G219500 Sobic003G184500 Sobic003G184500 Sobic003G399400--Sobic003G184500 Sobic006G108700 Sobic006G108700 Sobic003G399400--Sobic006G108700 Sobic006G271100 Sobic006G271100 Sobic003G399400--Sobic006G271100 Sobic009G159600 Sobic009G159600 Sobic003G399400--Sobic009G159600 Sobic001G399400 Sobic001G399400 Sobic003G399400--Sobic001G399400 Sobic001G451800 Sobic001G451800 Sobic003G399400--Sobic001G451800 Sobic005G016300 Sobic005G016300 Sobic003G399400--Sobic005G016300 Sobic002G004500--Sobic003G399400 Sobic002G004500--Sobic006G108700 Sobic006G228100 Sobic006G228100 Sobic002G004500--Sobic006G228100 Sobic002G004500--Sobic006G271100 Sobic002G004500--Sobic001G399400 Sobic002G004500--Sobic002G219500 Sobic004G225400 Sobic004G225400 Sobic002G004500--Sobic004G225400 Sobic002G004500--Sobic003G184500 Sobic001G530300 Sobic001G530300 Sobic002G004500--Sobic001G530300 Sobic002G219500--Sobic001G399400 Sobic002G219500--Sobic003G399400 Sobic002G219500--Sobic006G271100 Sobic002G219500--Sobic004G225400 Sobic005G188400 Sobic005G188400 Sobic002G219500--Sobic005G188400 Sobic002G219500--Sobic003G184500 Sobic002G219500--Sobic006G228100 Sobic002G219500--Sobic002G004500 Sobic002G219500--Sobic009G159600 Sobic001G430000 Sobic001G430000 Sobic003G184500--Sobic001G430000 Sobic003G184500--Sobic001G399400 Sobic008G107600 Sobic008G107600 Sobic003G184500--Sobic008G107600 Sobic003G184500--Sobic006G271100 Sobic002G359800 Sobic002G359800 Sobic003G184500--Sobic002G359800 Sobic002G184800 Sobic002G184800 Sobic003G184500--Sobic002G184800 Sobic003G184500--Sobic003G399400 Sobic003G184500--Sobic002G219500 Sobic003G023666 Sobic003G023666 Sobic003G184500--Sobic003G023666 Sobic006G108700--Sobic002G004500 Sobic006G108700--Sobic003G399400 Sobic001G205000 Sobic001G205000 Sobic006G108700--Sobic001G205000 Sobic006G108700--Sobic005G016300 Sobic006G108700--Sobic004G225400 Sobic006G108700--Sobic006G228100 Sobic006G108700--Sobic009G159600 Sobic009G178900 Sobic009G178900 Sobic006G108700--Sobic009G178900 Sobic006G108700--Sobic001G530300 Sobic009G070000 Sobic009G070000 Sobic006G271100--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic006G271100--Sobic003G047300 Sobic006G271100--Sobic006G228100 Sobic006G271100--Sobic001G399400 Sobic004G049800 Sobic004G049800 Sobic006G271100--Sobic004G049800 Sobic001G511200 Sobic001G511200 Sobic006G271100--Sobic001G511200 Sobic006G271100--Sobic003G184500 Sobic009G229100 Sobic009G229100 Sobic006G271100--Sobic009G229100 Sobic006G271100--Sobic002G219500 Sobic004G259101 Sobic004G259101 Sobic009G159600--Sobic004G259101 Sobic003G349800 Sobic003G349800 Sobic009G159600--Sobic003G349800 Sobic009G159600--Sobic003G399400 Sobic009G159600--Sobic002G219500 Sobic001G258100 Sobic001G258100 Sobic009G159600--Sobic001G258100 Sobic009G159600--Sobic004G225400 Sobic009G159600--Sobic002G004500 Sobic001G026700 Sobic001G026700 Sobic009G159600--Sobic001G026700 Sobic003G174900 Sobic003G174900 Sobic009G159600--Sobic003G174900 Sobic001G399400--Sobic002G219500 Sobic001G399400--Sobic006G271100 Sobic001G399400--Sobic003G184500 Sobic001G399400--Sobic009G070000 Sobic001G399400--Sobic006G228100 Sobic001G399400--Sobic003G399400 Sobic001G399400--Sobic002G004500 Sobic001G399400--Sobic005G188400 Sobic004G077100 Sobic004G077100 Sobic001G399400--Sobic004G077100 Sobic001G253900 Sobic001G253900 Sobic001G451800--Sobic001G253900 Sobic003G400600 Sobic003G400600 Sobic001G451800--Sobic003G400600 Sobic007G113900 Sobic007G113900 Sobic001G451800--Sobic007G113900 Sobic003G420100 Sobic003G420100 Sobic001G451800--Sobic003G420100 Sobic008G156900 Sobic008G156900 Sobic001G451800--Sobic008G156900 Sobic003G277200 Sobic003G277200 Sobic001G451800--Sobic003G277200 Sobic010G104400 Sobic010G104400 Sobic001G451800--Sobic010G104400 Sobic006G214000 Sobic006G214000 Sobic001G451800--Sobic006G214000 Sobic010G181500 Sobic010G181500 Sobic001G451800--Sobic010G181500 Sobic007G207700 Sobic007G207700 Sobic005G016300--Sobic007G207700 Sobic005G016300--Sobic004G077100 Sobic001G075400 Sobic001G075400 Sobic005G016300--Sobic001G075400 Sobic005G210600 Sobic005G210600 Sobic005G016300--Sobic005G210600 Sobic003G328500 Sobic003G328500 Sobic005G016300--Sobic003G328500 Sobic006G134200 Sobic006G134200 Sobic005G016300--Sobic006G134200 Sobic010G111200 Sobic010G111200 Sobic005G016300--Sobic010G111200 Sobic005G016300--Sobic001G205000 Sobic002G313000 Sobic002G313000 Sobic005G016300--Sobic002G313000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.