Gene annotation
Transcriptome id Sobic.009G178900.1
Synonym Sb09g023930
Functional annotation histone H3, putative, expressed
UniProt C5YZY0
Pfam PF00125
Panther DB PTHR11426 PTHR11426:SF78
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT4G40030 : Histone superfamily protein
RAP-DB (Rice) LOC_Os05g41080.1 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a044059
Brachypodium KQJ95915 , KQK05678
Barley -
Wheat TraesCS1B02G317300
Populus -


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cDNA sequences
Sobic.009G178900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G511200 expressed protein -
2 Sobic.006G069500 glutaredoxin, putative, expressed -
3 Sobic.003G273800 IQ calmodulin-binding motif domain containing protein, expressed -
4 Sobic.004G180400 remorin family protein, putative, expressed -
5 Sobic.003G364700 expressed protein -
6 Sobic.009G233600 OsFBLD9 - F-box, LRR and FBD domain containing protein, expressed -
7 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
8 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.006G271100 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
10 Sobic.009G229100 expressed protein -
11 Sobic.009G233500 expressed protein -
12 Sobic.005G188400 remorin C-terminal domain containing protein, putative, expressed -
13 Sobic.002G237700 expressed protein -
14 Sobic.009G070000 "GW5/qSW5(Ortholog in rice:Liu et al., 2017)"(PubMedID : 31659922)@IQ calmodulin-binding motif family protein, expressed -
15 Sobic.001G533200 plastocyanin-like domain containing protein, putative, expressed -
16 Sobic.002G356700 OsFBD6 - F-box and FBD domain containing protein, expressed -
17 Sobic.007G169000 similar to Putative uncharacterized protein P0562A06.5(PubMedID : 29862293)@harpin-induced protein 1 domain containing protein, expressed -
18 Sobic.010G013100 expressed protein -
19 Sobic.007G017900 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein -
20 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family


Gene co-expression network
sample Sobic009G178900 Sobic009G178900 Sobic001G511200 Sobic001G511200 Sobic009G178900--Sobic001G511200 Sobic006G069500 Sobic006G069500 Sobic009G178900--Sobic006G069500 Sobic003G273800 Sobic003G273800 Sobic009G178900--Sobic003G273800 Sobic004G180400 Sobic004G180400 Sobic009G178900--Sobic004G180400 Sobic003G364700 Sobic003G364700 Sobic009G178900--Sobic003G364700 Sobic009G233600 Sobic009G233600 Sobic009G178900--Sobic009G233600 Sobic004G077100 Sobic004G077100 Sobic009G178900--Sobic004G077100 Sobic005G016300 Sobic005G016300 Sobic009G178900--Sobic005G016300 Sobic006G271100 Sobic006G271100 Sobic009G178900--Sobic006G271100 Sobic001G511200--Sobic006G069500 Sobic001G511200--Sobic003G364700 Sobic009G229100 Sobic009G229100 Sobic001G511200--Sobic009G229100 Sobic001G511200--Sobic003G273800 Sobic001G511200--Sobic009G178900 Sobic002G356700 Sobic002G356700 Sobic001G511200--Sobic002G356700 Sobic001G511200--Sobic009G233600 Sobic008G127200 Sobic008G127200 Sobic001G511200--Sobic008G127200 Sobic003G201300 Sobic003G201300 Sobic001G511200--Sobic003G201300 Sobic006G069500--Sobic001G511200 Sobic006G069500--Sobic003G273800 Sobic006G069500--Sobic004G180400 Sobic006G069500--Sobic004G077100 Sobic006G069500--Sobic009G178900 Sobic005G188400 Sobic005G188400 Sobic006G069500--Sobic005G188400 Sobic002G237700 Sobic002G237700 Sobic006G069500--Sobic002G237700 Sobic006G069500--Sobic003G364700 Sobic009G233500 Sobic009G233500 Sobic006G069500--Sobic009G233500 Sobic003G273800--Sobic006G069500 Sobic003G273800--Sobic002G237700 Sobic003G273800--Sobic001G511200 Sobic003G273800--Sobic009G178900 Sobic003G273800--Sobic009G233600 Sobic003G273800--Sobic004G077100 Sobic003G273800--Sobic004G180400 Sobic003G273800--Sobic005G188400 Sobic001G059900 Sobic001G059900 Sobic003G273800--Sobic001G059900 Sobic004G180400--Sobic006G069500 Sobic004G180400--Sobic009G233500 Sobic004G180400--Sobic004G077100 Sobic004G180400--Sobic001G511200 Sobic004G180400--Sobic003G273800 Sobic004G180400--Sobic009G178900 Sobic001G533200 Sobic001G533200 Sobic004G180400--Sobic001G533200 Sobic001G075400 Sobic001G075400 Sobic004G180400--Sobic001G075400 Sobic005G210600 Sobic005G210600 Sobic004G180400--Sobic005G210600 Sobic003G364700--Sobic009G229100 Sobic003G364700--Sobic001G511200 Sobic003G364700--Sobic002G356700 Sobic007G051501 Sobic007G051501 Sobic003G364700--Sobic007G051501 Sobic003G364700--Sobic009G233600 Sobic005G022400 Sobic005G022400 Sobic003G364700--Sobic005G022400 Sobic003G423100 Sobic003G423100 Sobic003G364700--Sobic003G423100 Sobic003G178200 Sobic003G178200 Sobic003G364700--Sobic003G178200 Sobic009G070000 Sobic009G070000 Sobic003G364700--Sobic009G070000 Sobic009G233600--Sobic002G356700 Sobic009G233600--Sobic009G229100 Sobic009G233600--Sobic003G364700 Sobic009G233600--Sobic001G511200 Sobic004G356600 Sobic004G356600 Sobic009G233600--Sobic004G356600 Sobic009G233600--Sobic005G022400 Sobic010G145200 Sobic010G145200 Sobic009G233600--Sobic010G145200 Sobic009G233600--Sobic003G178200 Sobic009G233600--Sobic002G237700 Sobic004G077100--Sobic001G075400 Sobic004G077100--Sobic009G233500 Sobic004G077100--Sobic006G069500 Sobic004G077100--Sobic004G180400 Sobic003G041700 Sobic003G041700 Sobic004G077100--Sobic003G041700 Sobic004G077100--Sobic005G016300 Sobic004G077100--Sobic003G273800 Sobic010G104400 Sobic010G104400 Sobic004G077100--Sobic010G104400 Sobic006G214000 Sobic006G214000 Sobic004G077100--Sobic006G214000 Sobic007G207700 Sobic007G207700 Sobic005G016300--Sobic007G207700 Sobic005G016300--Sobic004G077100 Sobic005G016300--Sobic001G075400 Sobic005G016300--Sobic005G210600 Sobic003G328500 Sobic003G328500 Sobic005G016300--Sobic003G328500 Sobic006G134200 Sobic006G134200 Sobic005G016300--Sobic006G134200 Sobic010G111200 Sobic010G111200 Sobic005G016300--Sobic010G111200 Sobic001G205000 Sobic001G205000 Sobic005G016300--Sobic001G205000 Sobic002G313000 Sobic002G313000 Sobic005G016300--Sobic002G313000 Sobic006G271100--Sobic009G070000 Sobic003G047300 Sobic003G047300 Sobic006G271100--Sobic003G047300 Sobic006G228100 Sobic006G228100 Sobic006G271100--Sobic006G228100 Sobic001G399400 Sobic001G399400 Sobic006G271100--Sobic001G399400 Sobic004G049800 Sobic004G049800 Sobic006G271100--Sobic004G049800 Sobic006G271100--Sobic001G511200 Sobic003G184500 Sobic003G184500 Sobic006G271100--Sobic003G184500 Sobic006G271100--Sobic009G229100 Sobic002G219500 Sobic002G219500 Sobic006G271100--Sobic002G219500
Octagon: transcription factors


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