Gene annotation
Transcriptome id Sobic.001G205000.1
Synonym ATEB1C, ATEB1H1, EB1C, Sb01g018110
Functional annotation ATEB1A-like microtubule associated protein, putative, expressed
UniProt C5WX96
Pfam PF00307 PF03271
Panther DB PTHR10623 PTHR10623:SF15
NCBI CDD KOG3000; Microtubule-binding protein involved in cell cycle control
KEGG Orthology K10436; microtubule-associated protein, RP/EB family
Gene Ontology GO:0005515; protein binding GO:0008017microtubule binding


Orthologs (automatic annotation)
TAIR AT5G67270 : end binding protein 1C
RAP-DB (Rice) LOC_Os10g35580.1 : ATEB1A-like microtubule associated protein, putative, expressed
MaizeGDB (Corn) Zm00025a006450
Brachypodium KQJ97305
Barley HORVU1Hr1G044890.1 , HORVU1Hr1G044890.3 , HORVU1Hr1G044890.4 , HORVU1Hr1G044890.5
Wheat TraesCS1A02G170100 , TraesCS1B02G186800 , TraesCS1D02G167800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279601 - K11254: histone H4
2 Sobic.007G207700 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
3 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
4 Sobic.004G285900 HMG1/2, putative, expressed -
5 Sobic.006G134200 expressed protein -
6 Sobic.003G057100 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4
7 Sobic.005G016300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
9 Sobic.006G076400 histone H3, putative, expressed K11253: histone H3
10 Sobic.010G111200 "GASR7(Ortholog in rice:Huang et al., 2012)"(PubMedID : 31659934)@GASR7 - Gibberellin-regulated GASA/GAST/Snakin family protein precursor, expressed -
11 Sobic.006G108700 atypical receptor-like kinase MARK, putative, expressed -
12 Sobic.004G170500 histone H3, putative, expressed K11253: histone H3
13 Sobic.002G426800 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.002G276000 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
15 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8
16 Sobic.004G077100 Mad3/BUB1 homology region 1 domain containing protein, expressed K02178: checkpoint serine/threonine-protein kinase
17 Sobic.006G138900 expressed protein -
18 Sobic.009G233500 expressed protein -
19 Sobic.001G075400 expressed protein -
20 Sobic.001G054800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5


Gene co-expression network
sample Sobic001G205000 Sobic001G205000 Sobic004G279601 Sobic004G279601 Sobic001G205000--Sobic004G279601 Sobic007G207700 Sobic007G207700 Sobic001G205000--Sobic007G207700 Sobic003G328500 Sobic003G328500 Sobic001G205000--Sobic003G328500 Sobic004G285900 Sobic004G285900 Sobic001G205000--Sobic004G285900 Sobic006G134200 Sobic006G134200 Sobic001G205000--Sobic006G134200 Sobic003G057100 Sobic003G057100 Sobic001G205000--Sobic003G057100 Sobic005G016300 Sobic005G016300 Sobic001G205000--Sobic005G016300 Sobic001G078600 Sobic001G078600 Sobic001G205000--Sobic001G078600 Sobic006G076400 Sobic006G076400 Sobic001G205000--Sobic006G076400 Sobic004G279601--Sobic001G205000 Sobic004G279601--Sobic006G076400 Sobic004G279601--Sobic004G285900 Sobic004G279601--Sobic001G078600 Sobic006G081800 Sobic006G081800 Sobic004G279601--Sobic006G081800 Sobic004G205300 Sobic004G205300 Sobic004G279601--Sobic004G205300 Sobic007G214700 Sobic007G214700 Sobic004G279601--Sobic007G214700 Sobic004G279601--Sobic003G057100 Sobic001G261549 Sobic001G261549 Sobic004G279601--Sobic001G261549 Sobic007G207700--Sobic003G328500 Sobic007G207700--Sobic006G134200 Sobic007G207700--Sobic005G016300 Sobic007G017700 Sobic007G017700 Sobic007G207700--Sobic007G017700 Sobic001G075400 Sobic001G075400 Sobic007G207700--Sobic001G075400 Sobic006G179200 Sobic006G179200 Sobic007G207700--Sobic006G179200 Sobic001G091500 Sobic001G091500 Sobic007G207700--Sobic001G091500 Sobic005G210600 Sobic005G210600 Sobic007G207700--Sobic005G210600 Sobic002G313000 Sobic002G313000 Sobic007G207700--Sobic002G313000 Sobic003G328500--Sobic006G134200 Sobic001G177900 Sobic001G177900 Sobic003G328500--Sobic001G177900 Sobic003G328500--Sobic001G075400 Sobic003G328500--Sobic007G207700 Sobic003G387700 Sobic003G387700 Sobic003G328500--Sobic003G387700 Sobic004G257600 Sobic004G257600 Sobic003G328500--Sobic004G257600 Sobic003G260700 Sobic003G260700 Sobic003G328500--Sobic003G260700 Sobic005G144600 Sobic005G144600 Sobic003G328500--Sobic005G144600 Sobic002G426800 Sobic002G426800 Sobic003G328500--Sobic002G426800 Sobic004G285900--Sobic001G078600 Sobic004G285900--Sobic001G261549 Sobic004G285900--Sobic004G279601 Sobic004G285900--Sobic007G214700 Sobic006G102900 Sobic006G102900 Sobic004G285900--Sobic006G102900 Sobic002G162300 Sobic002G162300 Sobic004G285900--Sobic002G162300 Sobic007G154500 Sobic007G154500 Sobic004G285900--Sobic007G154500 Sobic009G189200 Sobic009G189200 Sobic004G285900--Sobic009G189200 Sobic004G285900--Sobic001G205000 Sobic006G134200--Sobic003G328500 Sobic006G134200--Sobic003G387700 Sobic006G134200--Sobic007G207700 Sobic006G134200--Sobic004G257600 Sobic007G100600 Sobic007G100600 Sobic006G134200--Sobic007G100600 Sobic006G134200--Sobic001G075400 Sobic006G134200--Sobic001G177900 Sobic010G105400 Sobic010G105400 Sobic006G134200--Sobic010G105400 Sobic006G134200--Sobic005G144600 Sobic002G276000 Sobic002G276000 Sobic003G057100--Sobic002G276000 Sobic001G054800 Sobic001G054800 Sobic003G057100--Sobic001G054800 Sobic001G529400 Sobic001G529400 Sobic003G057100--Sobic001G529400 Sobic003G347900 Sobic003G347900 Sobic003G057100--Sobic003G347900 Sobic002G291066 Sobic002G291066 Sobic003G057100--Sobic002G291066 Sobic010G047100 Sobic010G047100 Sobic003G057100--Sobic010G047100 Sobic001G009700 Sobic001G009700 Sobic003G057100--Sobic001G009700 Sobic006G191800 Sobic006G191800 Sobic003G057100--Sobic006G191800 Sobic004G170500 Sobic004G170500 Sobic003G057100--Sobic004G170500 Sobic005G016300--Sobic007G207700 Sobic004G077100 Sobic004G077100 Sobic005G016300--Sobic004G077100 Sobic005G016300--Sobic001G075400 Sobic005G016300--Sobic005G210600 Sobic005G016300--Sobic003G328500 Sobic005G016300--Sobic006G134200 Sobic010G111200 Sobic010G111200 Sobic005G016300--Sobic010G111200 Sobic005G016300--Sobic001G205000 Sobic005G016300--Sobic002G313000 Sobic001G078600--Sobic006G102900 Sobic001G078600--Sobic002G426800 Sobic010G274000 Sobic010G274000 Sobic001G078600--Sobic010G274000 Sobic001G078600--Sobic005G144600 Sobic004G197400 Sobic004G197400 Sobic001G078600--Sobic004G197400 Sobic001G078600--Sobic004G285900 Sobic006G116500 Sobic006G116500 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic001G078600--Sobic007G154500 Sobic006G076400--Sobic004G279601 Sobic006G076400--Sobic004G170500 Sobic006G076400--Sobic001G078600 Sobic006G076400--Sobic010G274000 Sobic006G076400--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic006G076400--Sobic004G355500 Sobic006G076400--Sobic006G102900 Sobic006G076400--Sobic007G154500 Sobic001G070300 Sobic001G070300 Sobic006G076400--Sobic001G070300
Octagon: transcription factors


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