Gene annotation
Transcriptome id Sobic.006G076400.1
Synonym Sb06g016330
Functional annotation histone H3, putative, expressed
UniProt C5XPA5
Pfam PF00125
Panther DB PTHR11426
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT1G09200 : Histone superfamily protein
RAP-DB (Rice) LOC_Os04g34240.1 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a056027 , Zm00025a011450 , Zm00025a039567 , Zm00025a056046 , Zm00025a023384 , Zm00025a026719 , Zm00025a031558 , Zm00025a041588 , Zm00025a011448 , Zm00025a020776 , Zm00025a049961 , Zm00025a025526 , Zm00025a050169 , Zm00025a041383 , Zm00025a020589
Brachypodium PNT61061 , KQK06043 , KQK05154 , KQK06659 , KQJ86807 , KQJ82897 , KQJ99805 , KQK19721 , PNT76594
Barley HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU1Hr1G058490.1 , HORVU1Hr1G017800.4 , HORVU1Hr1G017800.3 , HORVU1Hr1G017800.2 , HORVU1Hr1G017800.1 , HORVU1Hr1G058490.3 , HORVU6Hr1G029190.6 , HORVU6Hr1G029190.5 , HORVU6Hr1G029190.4 , HORVU6Hr1G029190.3 , HORVU6Hr1G029190.2 , HORVU6Hr1G029190.1 , HORVU1Hr1G058490.4 , HORVU7Hr1G025160.2 , HORVU7Hr1G025160.1 , HORVU7Hr1G032270.3 , HORVU7Hr1G032270.2 , HORVU7Hr1G032270.1 , HORVU7Hr1G100690.2 , HORVU7Hr1G100690.1 , HORVU7Hr1G032270.4 , HORVU7Hr1G012820.1 , HORVU7Hr1G012820.2 , HORVU7Hr1G012820.3 , HORVU7Hr1G012820.4 , HORVU7Hr1G012820.5 , HORVU7Hr1G012820.6 , HORVU6Hr1G011820.1 , HORVU2Hr1G090210.1 , HORVU2Hr1G090210.2 , HORVU2Hr1G090210.3 , HORVU7Hr1G021840.16 , HORVU7Hr1G021840.14 , HORVU7Hr1G021840.15 , HORVU7Hr1G021840.12 , HORVU7Hr1G021840.13 , HORVU7Hr1G021840.10 , HORVU7Hr1G021840.11 , HORVU7Hr1G025200.2 , HORVU7Hr1G025200.3 , HORVU7Hr1G025200.1 , HORVU6Hr1G031580.1 , HORVU6Hr1G031580.3 , HORVU6Hr1G031580.2 , HORVU1Hr1G020070.2 , HORVU7Hr1G029190.1 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.1 , HORVU1Hr1G058490.2 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4 , HORVU7Hr1G024990.4 , HORVU7Hr1G024990.1 , HORVU1Hr1G020070.1 , HORVU7Hr1G024990.3 , HORVU7Hr1G024990.2 , HORVU4Hr1G073150.4 , HORVU4Hr1G073150.2 , HORVU4Hr1G073150.1 , HORVU7Hr1G021840.4 , HORVU7Hr1G021840.5 , HORVU7Hr1G021840.6 , HORVU7Hr1G021840.7 , HORVU7Hr1G021840.1 , HORVU7Hr1G021840.2 , HORVU7Hr1G021840.3 , HORVU7Hr1G021840.8 , HORVU7Hr1G021840.9 , HORVU1Hr1G020070.3 , HORVU6Hr1G007470.1 , HORVU6Hr1G007470.2 , HORVU1Hr1G022400.3 , HORVU1Hr1G022400.2 , HORVU1Hr1G022400.1 , HORVU1Hr1G022400.4 , HORVU1Hr1G074340.1 , HORVU7Hr1G079790.1 , HORVU1Hr1G073670.1 , HORVU3Hr1G063270.1 , HORVU7Hr1G034470.1 , HORVU3Hr1G063270.2 , HORVU6Hr1G011520.1 , HORVU6Hr1G007820.3 , HORVU6Hr1G007820.2 , HORVU6Hr1G007820.1 , HORVU6Hr1G013290.1 , HORVU3Hr1G083350.8 , HORVU7Hr1G025330.1 , HORVU7Hr1G025150.1 , HORVU2Hr1G074240.1 , HORVU2Hr1G074240.3 , HORVU2Hr1G074240.2 , HORVU2Hr1G074240.5 , HORVU2Hr1G074240.4 , HORVU6Hr1G007820.4 , HORVU6Hr1G029200.3 , HORVU6Hr1G029200.2 , HORVU6Hr1G029200.1 , HORVU1Hr1G020050.2 , HORVU1Hr1G020050.3 , HORVU1Hr1G020050.1 , HORVU1Hr1G020050.4 , HORVU7Hr1G033030.1 , HORVU4Hr1G067970.1 , HORVU4Hr1G067970.3 , HORVU4Hr1G067970.2 , HORVU7Hr1G100450.1 , HORVU3Hr1G083350.1 , HORVU3Hr1G083350.2 , HORVU3Hr1G083350.3 , HORVU3Hr1G083350.4 , HORVU3Hr1G083350.5 , HORVU3Hr1G083350.6 , HORVU3Hr1G083350.7 , HORVU1Hr1G080190.1 , HORVU1Hr1G080190.3 , HORVU1Hr1G080190.2 , HORVU7Hr1G046350.1 , HORVU7Hr1G021840.23
Wheat TraesCS7A02G067800 , TraesCS7A02G442900 , TraesCS7D02G061900 , TraesCS6A02G038600 , TraesCS6A02G099700 , TraesCS2D02G316700 , TraesCS7B02G341600 , TraesCS6D02G044300 , TraesCS4A02G423800 , TraesCSU02G092100 , TraesCS6B02G053500 , TraesCS6B02G053300 , TraesCS2B02G337200 , TraesCS7D02G061500 , TraesCS4B02G275500 , TraesCS1A02G228800 , TraesCS6B02G053200 , TraesCS1A02G421300 , TraesCS3B02G167700 , TraesCS7A02G157100 , TraesCS6A02G038400 , TraesCS7D02G432000 , TraesCS4A02G421900 , TraesCS6A02G038500 , TraesCS4A02G421500
Populus -


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cDNA sequences
Sobic.006G076400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G279601 - K11254: histone H4
2 Sobic.004G170500 histone H3, putative, expressed K11253: histone H3
3 Sobic.001G078600 CAMK_CAMK_like_Aur_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K08850: aurora kinase, other
4 Sobic.010G274000 cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
5 Sobic.006G116500 expressed protein -
6 Sobic.004G355500 RPA2A - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
7 Sobic.006G102900 expressed protein -
8 Sobic.007G154500 F-box protein, putative, expressed -
9 Sobic.001G070300 expressed protein -
10 Sobic.001G521300 expressed protein -
11 Sobic.003G135400 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
12 Sobic.001G205000 ATEB1A-like microtubule associated protein, putative, expressed K10436: microtubule-associated protein, RP/EB family
13 Sobic.004G285900 HMG1/2, putative, expressed -
14 Sobic.002G162300 expressed protein K11270: chromosome transmission fidelity protein 8
15 Sobic.003G328500 Expressed in younger stem(PubMedID : 28649278)@cyclin, putative, expressed K05868: G2/mitotic-specific cyclin-B1
16 Sobic.006G278100 expressed protein -
17 Sobic.006G134900 ribonucleoside-diphosphate reductase small chain, putative, expressed K10808: ribonucleoside-diphosphate reductase subunit M2
18 Sobic.001G103000 DNA binding protein, putative, expressed -
19 Sobic.009G181500 Up-reguralion under heat(PubMedID : 24916767)@cyclin, putative, expressed -
20 Sobic.006G134200 expressed protein -


Gene co-expression network
sample Sobic006G076400 Sobic006G076400 Sobic004G279601 Sobic004G279601 Sobic006G076400--Sobic004G279601 Sobic004G170500 Sobic004G170500 Sobic006G076400--Sobic004G170500 Sobic001G078600 Sobic001G078600 Sobic006G076400--Sobic001G078600 Sobic010G274000 Sobic010G274000 Sobic006G076400--Sobic010G274000 Sobic006G116500 Sobic006G116500 Sobic006G076400--Sobic006G116500 Sobic004G355500 Sobic004G355500 Sobic006G076400--Sobic004G355500 Sobic006G102900 Sobic006G102900 Sobic006G076400--Sobic006G102900 Sobic007G154500 Sobic007G154500 Sobic006G076400--Sobic007G154500 Sobic001G070300 Sobic001G070300 Sobic006G076400--Sobic001G070300 Sobic001G205000 Sobic001G205000 Sobic004G279601--Sobic001G205000 Sobic004G279601--Sobic006G076400 Sobic004G285900 Sobic004G285900 Sobic004G279601--Sobic004G285900 Sobic004G279601--Sobic001G078600 Sobic006G081800 Sobic006G081800 Sobic004G279601--Sobic006G081800 Sobic004G205300 Sobic004G205300 Sobic004G279601--Sobic004G205300 Sobic007G214700 Sobic007G214700 Sobic004G279601--Sobic007G214700 Sobic003G057100 Sobic003G057100 Sobic004G279601--Sobic003G057100 Sobic001G261549 Sobic001G261549 Sobic004G279601--Sobic001G261549 Sobic004G170500--Sobic006G076400 Sobic004G170500--Sobic003G057100 Sobic006G134900 Sobic006G134900 Sobic004G170500--Sobic006G134900 Sobic004G170500--Sobic001G078600 Sobic004G170500--Sobic004G279601 Sobic003G347900 Sobic003G347900 Sobic004G170500--Sobic003G347900 Sobic004G170500--Sobic006G081800 Sobic002G136600 Sobic002G136600 Sobic004G170500--Sobic002G136600 Sobic004G170500--Sobic001G205000 Sobic001G078600--Sobic006G102900 Sobic002G426800 Sobic002G426800 Sobic001G078600--Sobic002G426800 Sobic001G078600--Sobic010G274000 Sobic005G144600 Sobic005G144600 Sobic001G078600--Sobic005G144600 Sobic004G197400 Sobic004G197400 Sobic001G078600--Sobic004G197400 Sobic001G078600--Sobic004G285900 Sobic001G078600--Sobic006G116500 Sobic001G528600 Sobic001G528600 Sobic001G078600--Sobic001G528600 Sobic001G078600--Sobic007G154500 Sobic010G274000--Sobic001G070300 Sobic009G181500 Sobic009G181500 Sobic010G274000--Sobic009G181500 Sobic010G274000--Sobic005G144600 Sobic002G191000 Sobic002G191000 Sobic010G274000--Sobic002G191000 Sobic010G274000--Sobic001G078600 Sobic010G274000--Sobic004G197400 Sobic007G100600 Sobic007G100600 Sobic010G274000--Sobic007G100600 Sobic010G274000--Sobic006G102900 Sobic010G274000--Sobic006G116500 Sobic001G456500 Sobic001G456500 Sobic006G116500--Sobic001G456500 Sobic006G116500--Sobic004G355500 Sobic001G169800 Sobic001G169800 Sobic006G116500--Sobic001G169800 Sobic006G116500--Sobic001G070300 Sobic003G179500 Sobic003G179500 Sobic006G116500--Sobic003G179500 Sobic008G129200 Sobic008G129200 Sobic006G116500--Sobic008G129200 Sobic002G223900 Sobic002G223900 Sobic006G116500--Sobic002G223900 Sobic004G331600 Sobic004G331600 Sobic006G116500--Sobic004G331600 Sobic004G047100 Sobic004G047100 Sobic006G116500--Sobic004G047100 Sobic004G355500--Sobic006G116500 Sobic004G355500--Sobic001G456500 Sobic007G152900 Sobic007G152900 Sobic004G355500--Sobic007G152900 Sobic010G103700 Sobic010G103700 Sobic004G355500--Sobic010G103700 Sobic004G355500--Sobic001G169800 Sobic004G355500--Sobic004G197400 Sobic009G088200 Sobic009G088200 Sobic004G355500--Sobic009G088200 Sobic001G103000 Sobic001G103000 Sobic004G355500--Sobic001G103000 Sobic004G355500--Sobic008G129200 Sobic006G102900--Sobic001G078600 Sobic003G107200 Sobic003G107200 Sobic006G102900--Sobic003G107200 Sobic006G102900--Sobic009G181500 Sobic006G102900--Sobic001G261549 Sobic006G102900--Sobic007G154500 Sobic006G102900--Sobic002G426800 Sobic006G102900--Sobic010G274000 Sobic006G102900--Sobic004G047100 Sobic009G189200 Sobic009G189200 Sobic006G102900--Sobic009G189200 Sobic007G154500--Sobic006G102900 Sobic007G154500--Sobic001G078600 Sobic007G154500--Sobic002G426800 Sobic002G146601 Sobic002G146601 Sobic007G154500--Sobic002G146601 Sobic007G154500--Sobic003G107200 Sobic007G154500--Sobic006G116500 Sobic007G154500--Sobic004G047100 Sobic007G154500--Sobic001G261549 Sobic007G154500--Sobic004G285900 Sobic001G070300--Sobic010G274000 Sobic001G070300--Sobic007G100600 Sobic001G070300--Sobic006G116500 Sobic001G070300--Sobic002G191000 Sobic001G070300--Sobic009G181500 Sobic001G070300--Sobic004G197400 Sobic001G070300--Sobic005G144600 Sobic001G142000 Sobic001G142000 Sobic001G070300--Sobic001G142000 Sobic001G070300--Sobic004G047100
Octagon: transcription factors


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